Hb_000363_060

Information

Type transcription factor
Description TF Family: mTERF
Location Contig363: 55198-60434
Sequence    

Annotation

kegg
ID rcu:RCOM_0047430
description hypothetical protein
nr
ID XP_002529053.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q6P6Q6
description Transcription termination factor 3, mitochondrial OS=Rattus norvegicus GN=Mterf3 PE=2 SV=1
trembl
ID B9SST4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0047430 PE=4 SV=1
Gene Ontology
ID GO:0005739
description mitochondrial transcription termination factor family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37265: 55200-55620 , PASA_asmbl_37266: 55665-57075 , PASA_asmbl_37267: 57113-57699 , PASA_asmbl_37268: 57248-57778 , PASA_asmbl_37269: 60200-60331
cDNA
(Sanger)
(ID:Location)		 042_K17r.ab1: 60580-61668

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000363_060 0.0 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
2 Hb_001660_120 0.074607696 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]
3 Hb_025477_050 0.0826209754 - - ABC transporter family protein [Hevea brasiliensis]
4 Hb_031042_060 0.08366257 - - PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
5 Hb_001472_160 0.088294374 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
6 Hb_000331_130 0.0896659901 transcription factor TF Family: Trihelix conserved hypothetical protein [Ricinus communis]
7 Hb_000144_060 0.0921027786 - - PREDICTED: uncharacterized protein At5g03900, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_013405_080 0.0924894486 - - PREDICTED: proline--tRNA ligase [Jatropha curcas]
9 Hb_004884_180 0.0933166032 - - PREDICTED: protein TIC 56, chloroplastic [Jatropha curcas]
10 Hb_002053_110 0.0943443543 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_008206_060 0.0966094464 - - PREDICTED: preprotein translocase subunit SCY1, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_007769_040 0.0980790085 - - PREDICTED: probable threonine--tRNA ligase, cytoplasmic [Jatropha curcas]
13 Hb_011861_050 0.0997029161 - - PREDICTED: COBW domain-containing protein 1 [Jatropha curcas]
14 Hb_000033_110 0.1035806703 - - hypothetical protein JCGZ_19253 [Jatropha curcas]
15 Hb_000260_710 0.105518195 - - PREDICTED: uncharacterized protein LOC105649017 isoform X1 [Jatropha curcas]
16 Hb_001377_040 0.1063739143 - - chitinase, putative [Ricinus communis]
17 Hb_000613_120 0.1068150125 transcription factor TF Family: SET PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
18 Hb_000589_110 0.1069690273 - - PREDICTED: uncharacterized protein LOC105647614 isoform X1 [Jatropha curcas]
19 Hb_002150_140 0.107205728 - - PREDICTED: girdin-like [Jatropha curcas]
20 Hb_000445_140 0.1073169474 - - hypothetical protein RCOM_0561550 [Ricinus communis]

Gene co-expression network

sample Hb_000363_060 Hb_000363_060 Hb_001660_120 Hb_001660_120 Hb_000363_060--Hb_001660_120 Hb_025477_050 Hb_025477_050 Hb_000363_060--Hb_025477_050 Hb_031042_060 Hb_031042_060 Hb_000363_060--Hb_031042_060 Hb_001472_160 Hb_001472_160 Hb_000363_060--Hb_001472_160 Hb_000331_130 Hb_000331_130 Hb_000363_060--Hb_000331_130 Hb_000144_060 Hb_000144_060 Hb_000363_060--Hb_000144_060 Hb_013405_080 Hb_013405_080 Hb_001660_120--Hb_013405_080 Hb_001662_140 Hb_001662_140 Hb_001660_120--Hb_001662_140 Hb_001660_120--Hb_000331_130 Hb_000221_140 Hb_000221_140 Hb_001660_120--Hb_000221_140 Hb_033312_010 Hb_033312_010 Hb_001660_120--Hb_033312_010 Hb_025477_050--Hb_013405_080 Hb_007769_040 Hb_007769_040 Hb_025477_050--Hb_007769_040 Hb_025477_050--Hb_001472_160 Hb_025477_050--Hb_000144_060 Hb_000345_370 Hb_000345_370 Hb_025477_050--Hb_000345_370 Hb_025477_050--Hb_001660_120 Hb_001789_160 Hb_001789_160 Hb_031042_060--Hb_001789_160 Hb_000260_710 Hb_000260_710 Hb_031042_060--Hb_000260_710 Hb_004884_180 Hb_004884_180 Hb_031042_060--Hb_004884_180 Hb_010174_090 Hb_010174_090 Hb_031042_060--Hb_010174_090 Hb_021650_010 Hb_021650_010 Hb_031042_060--Hb_021650_010 Hb_001472_160--Hb_004884_180 Hb_000220_210 Hb_000220_210 Hb_001472_160--Hb_000220_210 Hb_004225_040 Hb_004225_040 Hb_001472_160--Hb_004225_040 Hb_000309_020 Hb_000309_020 Hb_001472_160--Hb_000309_020 Hb_002973_110 Hb_002973_110 Hb_001472_160--Hb_002973_110 Hb_000331_130--Hb_001662_140 Hb_007035_040 Hb_007035_040 Hb_000331_130--Hb_007035_040 Hb_000331_130--Hb_004884_180 Hb_002233_130 Hb_002233_130 Hb_000331_130--Hb_002233_130 Hb_000144_060--Hb_000345_370 Hb_000144_060--Hb_000309_020 Hb_011861_050 Hb_011861_050 Hb_000144_060--Hb_011861_050 Hb_002542_160 Hb_002542_160 Hb_000144_060--Hb_002542_160 Hb_002282_070 Hb_002282_070 Hb_000144_060--Hb_002282_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.41251 6.61578 15.2128 6.43609 9.3528 7.9936
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.55095 3.65732 5.00142 5.01604 24.1492

CAGE analysis