Hb_007769_040

Information

Type -
Description -
Location Contig7769: 27411-33065
Sequence    

Annotation

kegg
ID pop:POPTR_0014s16030g
description POPTRDRAFT_732406; hypothetical protein
nr
ID XP_012080702.1
description PREDICTED: probable threonine--tRNA ligase, cytoplasmic [Jatropha curcas]
swissprot
ID Q0I902
description Threonine--tRNA ligase OS=Synechococcus sp. (strain CC9311) GN=thrS PE=3 SV=1
trembl
ID A0A067K3R0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13804 PE=3 SV=1
Gene Ontology
ID GO:0005737
description probable threonine--trna cytoplasmic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57846: 27376-28603 , PASA_asmbl_57847: 28610-32684
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007769_040 0.0 - - PREDICTED: probable threonine--tRNA ligase, cytoplasmic [Jatropha curcas]
2 Hb_025477_050 0.0605672892 - - ABC transporter family protein [Hevea brasiliensis]
3 Hb_000589_110 0.0828858367 - - PREDICTED: uncharacterized protein LOC105647614 isoform X1 [Jatropha curcas]
4 Hb_000345_370 0.0869879426 - - PREDICTED: probable Xaa-Pro aminopeptidase P [Jatropha curcas]
5 Hb_000479_170 0.0874654743 - - chaperone clpb, putative [Ricinus communis]
6 Hb_013405_080 0.0874863487 - - PREDICTED: proline--tRNA ligase [Jatropha curcas]
7 Hb_001220_050 0.0918030851 - - DNA-damage-inducible protein f, putative [Ricinus communis]
8 Hb_001472_160 0.092782068 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
9 Hb_007192_090 0.0929983453 - - PREDICTED: elongation factor Tu, chloroplastic-like [Glycine max]
10 Hb_000363_060 0.0980790085 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
11 Hb_000144_060 0.0997097267 - - PREDICTED: uncharacterized protein At5g03900, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_002282_070 0.1013424811 - - PREDICTED: protein DJ-1 homolog C isoform X2 [Jatropha curcas]
13 Hb_001660_120 0.1019540111 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]
14 Hb_005250_010 0.1043624811 - - hypothetical protein JCGZ_15339 [Jatropha curcas]
15 Hb_093458_060 0.1052743035 - - PREDICTED: uncharacterized protein LOC105633194 [Jatropha curcas]
16 Hb_000220_210 0.1055447721 - - PREDICTED: sec-independent protein translocase protein TATC, chloroplastic [Jatropha curcas]
17 Hb_000934_110 0.1084693898 - - PREDICTED: protein trichome berefringence-like 7 [Jatropha curcas]
18 Hb_003475_020 0.1089153041 - - hypothetical protein JCGZ_13177 [Jatropha curcas]
19 Hb_001080_070 0.1096924278 - - 1,4-alpha-glucan branching enzyme [Manihot esculenta]
20 Hb_002053_110 0.1110130541 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_007769_040 Hb_007769_040 Hb_025477_050 Hb_025477_050 Hb_007769_040--Hb_025477_050 Hb_000589_110 Hb_000589_110 Hb_007769_040--Hb_000589_110 Hb_000345_370 Hb_000345_370 Hb_007769_040--Hb_000345_370 Hb_000479_170 Hb_000479_170 Hb_007769_040--Hb_000479_170 Hb_013405_080 Hb_013405_080 Hb_007769_040--Hb_013405_080 Hb_001220_050 Hb_001220_050 Hb_007769_040--Hb_001220_050 Hb_025477_050--Hb_013405_080 Hb_001472_160 Hb_001472_160 Hb_025477_050--Hb_001472_160 Hb_000144_060 Hb_000144_060 Hb_025477_050--Hb_000144_060 Hb_025477_050--Hb_000345_370 Hb_001660_120 Hb_001660_120 Hb_025477_050--Hb_001660_120 Hb_000589_110--Hb_013405_080 Hb_005250_010 Hb_005250_010 Hb_000589_110--Hb_005250_010 Hb_000589_110--Hb_025477_050 Hb_007192_090 Hb_007192_090 Hb_000589_110--Hb_007192_090 Hb_000555_020 Hb_000555_020 Hb_000589_110--Hb_000555_020 Hb_000345_370--Hb_000144_060 Hb_002282_070 Hb_002282_070 Hb_000345_370--Hb_002282_070 Hb_002542_160 Hb_002542_160 Hb_000345_370--Hb_002542_160 Hb_000220_210 Hb_000220_210 Hb_000345_370--Hb_000220_210 Hb_000309_020 Hb_000309_020 Hb_000345_370--Hb_000309_020 Hb_016461_030 Hb_016461_030 Hb_000345_370--Hb_016461_030 Hb_011931_060 Hb_011931_060 Hb_000479_170--Hb_011931_060 Hb_000479_170--Hb_005250_010 Hb_000479_170--Hb_025477_050 Hb_005211_020 Hb_005211_020 Hb_000479_170--Hb_005211_020 Hb_007545_130 Hb_007545_130 Hb_000479_170--Hb_007545_130 Hb_013405_080--Hb_001660_120 Hb_000300_470 Hb_000300_470 Hb_013405_080--Hb_000300_470 Hb_013405_080--Hb_005250_010 Hb_000033_110 Hb_000033_110 Hb_013405_080--Hb_000033_110 Hb_000320_470 Hb_000320_470 Hb_013405_080--Hb_000320_470 Hb_001220_050--Hb_000345_370 Hb_009020_040 Hb_009020_040 Hb_001220_050--Hb_009020_040 Hb_011861_050 Hb_011861_050 Hb_001220_050--Hb_011861_050 Hb_001723_030 Hb_001723_030 Hb_001220_050--Hb_001723_030 Hb_006198_130 Hb_006198_130 Hb_001220_050--Hb_006198_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.51531 4.08926 5.64583 4.57298 4.9645 4.44102
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.23609 2.75732 1.89275 2.29888 15.3782

CAGE analysis