Hb_000309_020

Information

Type -
Description -
Location Contig309: 20753-24477
Sequence    

Annotation

kegg
ID pop:POPTR_0017s10940g
description POPTRDRAFT_835677; hypothetical protein
nr
ID XP_012081754.1
description PREDICTED: uncharacterized protein LOC105641764 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LDQ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09612 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nuclear pore complex protein nup214

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32611: 20772-24459
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000309_020 0.0 - - PREDICTED: uncharacterized protein LOC105641764 [Jatropha curcas]
2 Hb_002542_160 0.0558405396 - - PREDICTED: peptide chain release factor APG3, chloroplastic [Jatropha curcas]
3 Hb_000480_040 0.0585804822 - - PREDICTED: L-Ala-D/L-amino acid epimerase isoform X2 [Jatropha curcas]
4 Hb_000220_210 0.0636042017 - - PREDICTED: sec-independent protein translocase protein TATC, chloroplastic [Jatropha curcas]
5 Hb_000345_370 0.0663271226 - - PREDICTED: probable Xaa-Pro aminopeptidase P [Jatropha curcas]
6 Hb_000085_070 0.0690120947 - - PREDICTED: trigger factor-like protein TIG, Chloroplastic isoform X1 [Jatropha curcas]
7 Hb_000144_060 0.069063168 - - PREDICTED: uncharacterized protein At5g03900, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_001472_160 0.0808805234 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
9 Hb_011861_050 0.0819463521 - - PREDICTED: COBW domain-containing protein 1 [Jatropha curcas]
10 Hb_016461_030 0.082031736 - - PREDICTED: putative leucine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
11 Hb_001723_030 0.0850451481 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Jatropha curcas]
12 Hb_000613_120 0.0923133231 transcription factor TF Family: SET PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
13 Hb_025477_050 0.0928374967 - - ABC transporter family protein [Hevea brasiliensis]
14 Hb_002282_070 0.0929289113 - - PREDICTED: protein DJ-1 homolog C isoform X2 [Jatropha curcas]
15 Hb_000108_020 0.0947698835 - - hypothetical protein POPTR_0019s02430g [Populus trichocarpa]
16 Hb_001427_040 0.0958747488 - - PREDICTED: uncharacterized protein LOC105637784 [Jatropha curcas]
17 Hb_004884_180 0.0972903512 - - PREDICTED: protein TIC 56, chloroplastic [Jatropha curcas]
18 Hb_000260_710 0.0973482325 - - PREDICTED: uncharacterized protein LOC105649017 isoform X1 [Jatropha curcas]
19 Hb_000941_100 0.1004260082 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]
20 Hb_006198_130 0.1034115146 - - PREDICTED: uncharacterized protein LOC105644406 [Jatropha curcas]

Gene co-expression network

sample Hb_000309_020 Hb_000309_020 Hb_002542_160 Hb_002542_160 Hb_000309_020--Hb_002542_160 Hb_000480_040 Hb_000480_040 Hb_000309_020--Hb_000480_040 Hb_000220_210 Hb_000220_210 Hb_000309_020--Hb_000220_210 Hb_000345_370 Hb_000345_370 Hb_000309_020--Hb_000345_370 Hb_000085_070 Hb_000085_070 Hb_000309_020--Hb_000085_070 Hb_000144_060 Hb_000144_060 Hb_000309_020--Hb_000144_060 Hb_002542_160--Hb_000220_210 Hb_002542_160--Hb_000345_370 Hb_002542_160--Hb_000085_070 Hb_016461_030 Hb_016461_030 Hb_002542_160--Hb_016461_030 Hb_000032_500 Hb_000032_500 Hb_002542_160--Hb_000032_500 Hb_011861_050 Hb_011861_050 Hb_000480_040--Hb_011861_050 Hb_000480_040--Hb_000085_070 Hb_000941_100 Hb_000941_100 Hb_000480_040--Hb_000941_100 Hb_001195_770 Hb_001195_770 Hb_000480_040--Hb_001195_770 Hb_000108_020 Hb_000108_020 Hb_000480_040--Hb_000108_020 Hb_000220_210--Hb_000345_370 Hb_001427_040 Hb_001427_040 Hb_000220_210--Hb_001427_040 Hb_001472_160 Hb_001472_160 Hb_000220_210--Hb_001472_160 Hb_004884_180 Hb_004884_180 Hb_000220_210--Hb_004884_180 Hb_000345_370--Hb_000144_060 Hb_002282_070 Hb_002282_070 Hb_000345_370--Hb_002282_070 Hb_000345_370--Hb_016461_030 Hb_000085_070--Hb_000108_020 Hb_003355_010 Hb_003355_010 Hb_000085_070--Hb_003355_010 Hb_000085_070--Hb_000220_210 Hb_000144_060--Hb_011861_050 Hb_025477_050 Hb_025477_050 Hb_000144_060--Hb_025477_050 Hb_000144_060--Hb_002542_160 Hb_000144_060--Hb_002282_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.71431 6.87174 24.548 12.3061 9.84019 9.23437
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.4341 6.27443 5.56992 9.45392 39.9482

CAGE analysis