Hb_000085_070

Information

Type -
Description -
Location Contig85: 43281-54448
Sequence    

Annotation

kegg
ID rcu:RCOM_0546740
description Trigger factor, putative
nr
ID XP_012070914.1
description PREDICTED: trigger factor-like protein TIG, Chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q8S9L5
description Trigger factor-like protein TIG, Chloroplastic OS=Arabidopsis thaliana GN=TIG PE=2 SV=1
trembl
ID A0A067KSK7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00953 PE=4 SV=1
Gene Ontology
ID GO:0006457
description trigger factor-like protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60329: 47147-54358 , PASA_asmbl_60330: 43488-54357 , PASA_asmbl_60331: 51202-51697
cDNA
(Sanger)
(ID:Location)		 022_P16r.ab1: 40698-42905

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000085_070 0.0 - - PREDICTED: trigger factor-like protein TIG, Chloroplastic isoform X1 [Jatropha curcas]
2 Hb_000108_020 0.0687771377 - - hypothetical protein POPTR_0019s02430g [Populus trichocarpa]
3 Hb_000309_020 0.0690120947 - - PREDICTED: uncharacterized protein LOC105641764 [Jatropha curcas]
4 Hb_000480_040 0.070120588 - - PREDICTED: L-Ala-D/L-amino acid epimerase isoform X2 [Jatropha curcas]
5 Hb_002542_160 0.071305257 - - PREDICTED: peptide chain release factor APG3, chloroplastic [Jatropha curcas]
6 Hb_003355_010 0.0924625956 - - Heat shock 70 kDa protein, putative [Ricinus communis]
7 Hb_000220_210 0.0929097264 - - PREDICTED: sec-independent protein translocase protein TATC, chloroplastic [Jatropha curcas]
8 Hb_009524_030 0.0945118004 - - PREDICTED: uncharacterized protein LOC105650971 [Jatropha curcas]
9 Hb_016461_030 0.0956936743 - - PREDICTED: putative leucine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
10 Hb_001195_770 0.0970592742 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
11 Hb_000345_370 0.0992898842 - - PREDICTED: probable Xaa-Pro aminopeptidase P [Jatropha curcas]
12 Hb_004710_020 0.09960086 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
13 Hb_007441_310 0.1008290394 - - PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Jatropha curcas]
14 Hb_001832_200 0.1017735665 - - PREDICTED: PCI domain-containing protein 2 isoform X1 [Jatropha curcas]
15 Hb_001438_010 0.1021255783 - - PREDICTED: uncharacterized protein LOC105639111 isoform X1 [Jatropha curcas]
16 Hb_011861_050 0.10269963 - - PREDICTED: COBW domain-containing protein 1 [Jatropha curcas]
17 Hb_000941_100 0.1030268174 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]
18 Hb_000816_200 0.1030808849 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
19 Hb_000032_500 0.1036372994 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
20 Hb_000300_470 0.1037718797 - - PREDICTED: nucleolin-like [Jatropha curcas]

Gene co-expression network

sample Hb_000085_070 Hb_000085_070 Hb_000108_020 Hb_000108_020 Hb_000085_070--Hb_000108_020 Hb_000309_020 Hb_000309_020 Hb_000085_070--Hb_000309_020 Hb_000480_040 Hb_000480_040 Hb_000085_070--Hb_000480_040 Hb_002542_160 Hb_002542_160 Hb_000085_070--Hb_002542_160 Hb_003355_010 Hb_003355_010 Hb_000085_070--Hb_003355_010 Hb_000220_210 Hb_000220_210 Hb_000085_070--Hb_000220_210 Hb_068079_010 Hb_068079_010 Hb_000108_020--Hb_068079_010 Hb_022693_130 Hb_022693_130 Hb_000108_020--Hb_022693_130 Hb_160271_010 Hb_160271_010 Hb_000108_020--Hb_160271_010 Hb_000645_180 Hb_000645_180 Hb_000108_020--Hb_000645_180 Hb_000108_020--Hb_000480_040 Hb_000309_020--Hb_002542_160 Hb_000309_020--Hb_000480_040 Hb_000309_020--Hb_000220_210 Hb_000345_370 Hb_000345_370 Hb_000309_020--Hb_000345_370 Hb_000144_060 Hb_000144_060 Hb_000309_020--Hb_000144_060 Hb_011861_050 Hb_011861_050 Hb_000480_040--Hb_011861_050 Hb_000941_100 Hb_000941_100 Hb_000480_040--Hb_000941_100 Hb_001195_770 Hb_001195_770 Hb_000480_040--Hb_001195_770 Hb_002542_160--Hb_000220_210 Hb_002542_160--Hb_000345_370 Hb_016461_030 Hb_016461_030 Hb_002542_160--Hb_016461_030 Hb_000032_500 Hb_000032_500 Hb_002542_160--Hb_000032_500 Hb_106890_010 Hb_106890_010 Hb_003355_010--Hb_106890_010 Hb_030736_040 Hb_030736_040 Hb_003355_010--Hb_030736_040 Hb_005571_010 Hb_005571_010 Hb_003355_010--Hb_005571_010 Hb_000496_130 Hb_000496_130 Hb_003355_010--Hb_000496_130 Hb_007741_120 Hb_007741_120 Hb_003355_010--Hb_007741_120 Hb_003490_060 Hb_003490_060 Hb_003355_010--Hb_003490_060 Hb_000220_210--Hb_000345_370 Hb_001427_040 Hb_001427_040 Hb_000220_210--Hb_001427_040 Hb_001472_160 Hb_001472_160 Hb_000220_210--Hb_001472_160 Hb_004884_180 Hb_004884_180 Hb_000220_210--Hb_004884_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.19108 4.26211 18.4928 10.7953 5.73255 7.4618
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.67456 5.91687 4.05914 10.0822 27.2178

CAGE analysis