Hb_001427_040

Information

Type -
Description -
Location Contig1427: 69780-72058
Sequence    

Annotation

kegg
ID cic:CICLE_v10009015mg
description hypothetical protein
nr
ID XP_012076791.1
description PREDICTED: uncharacterized protein LOC105637784 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KC13
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07312 PE=4 SV=1
Gene Ontology
ID GO:0005783
description plasma membrane

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11309: 69187-69566 , PASA_asmbl_11310: 69748-72061
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001427_040 0.0 - - PREDICTED: uncharacterized protein LOC105637784 [Jatropha curcas]
2 Hb_002282_070 0.0577864004 - - PREDICTED: protein DJ-1 homolog C isoform X2 [Jatropha curcas]
3 Hb_000220_210 0.0769550167 - - PREDICTED: sec-independent protein translocase protein TATC, chloroplastic [Jatropha curcas]
4 Hb_016461_030 0.0813955613 - - PREDICTED: putative leucine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
5 Hb_002542_160 0.0829712649 - - PREDICTED: peptide chain release factor APG3, chloroplastic [Jatropha curcas]
6 Hb_000345_370 0.0836939789 - - PREDICTED: probable Xaa-Pro aminopeptidase P [Jatropha curcas]
7 Hb_002660_190 0.0864093873 - - PREDICTED: dnaJ protein P58IPK homolog [Jatropha curcas]
8 Hb_003777_020 0.0894520826 - - Fructose-1,6-bisphosphatase, cytosolic, putative [Ricinus communis]
9 Hb_000309_020 0.0958747488 - - PREDICTED: uncharacterized protein LOC105641764 [Jatropha curcas]
10 Hb_032258_010 0.1004341848 - - hypothetical protein POPTR_0013s025001g, partial [Populus trichocarpa]
11 Hb_003475_020 0.1062745143 - - hypothetical protein JCGZ_13177 [Jatropha curcas]
12 Hb_000144_060 0.1067600622 - - PREDICTED: uncharacterized protein At5g03900, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_004108_060 0.1074499392 - - hypothetical protein JCGZ_21975 [Jatropha curcas]
14 Hb_001472_160 0.1097102093 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
15 Hb_002685_060 0.1100203399 - - 30S ribosomal protein S5, putative [Ricinus communis]
16 Hb_003878_080 0.1160381306 - - PREDICTED: uncharacterized protein LOC105637045 [Jatropha curcas]
17 Hb_025477_050 0.1162563822 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_001723_030 0.1168460985 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Jatropha curcas]
19 Hb_000069_490 0.1176874784 - - conserved hypothetical protein [Ricinus communis]
20 Hb_093458_060 0.1195932434 - - PREDICTED: uncharacterized protein LOC105633194 [Jatropha curcas]

Gene co-expression network

sample Hb_001427_040 Hb_001427_040 Hb_002282_070 Hb_002282_070 Hb_001427_040--Hb_002282_070 Hb_000220_210 Hb_000220_210 Hb_001427_040--Hb_000220_210 Hb_016461_030 Hb_016461_030 Hb_001427_040--Hb_016461_030 Hb_002542_160 Hb_002542_160 Hb_001427_040--Hb_002542_160 Hb_000345_370 Hb_000345_370 Hb_001427_040--Hb_000345_370 Hb_002660_190 Hb_002660_190 Hb_001427_040--Hb_002660_190 Hb_002282_070--Hb_016461_030 Hb_002282_070--Hb_000345_370 Hb_003777_020 Hb_003777_020 Hb_002282_070--Hb_003777_020 Hb_002685_060 Hb_002685_060 Hb_002282_070--Hb_002685_060 Hb_000144_060 Hb_000144_060 Hb_002282_070--Hb_000144_060 Hb_000220_210--Hb_002542_160 Hb_000309_020 Hb_000309_020 Hb_000220_210--Hb_000309_020 Hb_000220_210--Hb_000345_370 Hb_001472_160 Hb_001472_160 Hb_000220_210--Hb_001472_160 Hb_004884_180 Hb_004884_180 Hb_000220_210--Hb_004884_180 Hb_000816_200 Hb_000816_200 Hb_016461_030--Hb_000816_200 Hb_016461_030--Hb_000345_370 Hb_016461_030--Hb_003777_020 Hb_016461_030--Hb_002542_160 Hb_002542_160--Hb_000309_020 Hb_002542_160--Hb_000345_370 Hb_000085_070 Hb_000085_070 Hb_002542_160--Hb_000085_070 Hb_000032_500 Hb_000032_500 Hb_002542_160--Hb_000032_500 Hb_000345_370--Hb_000144_060 Hb_000345_370--Hb_000309_020 Hb_004108_060 Hb_004108_060 Hb_002660_190--Hb_004108_060 Hb_002660_190--Hb_002282_070 Hb_011861_050 Hb_011861_050 Hb_002660_190--Hb_011861_050 Hb_002660_190--Hb_000345_370 Hb_003475_020 Hb_003475_020 Hb_002660_190--Hb_003475_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.2856 15.9122 42.0117 19.8259 29.5016 17.2761
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.3344 18.1469 18.5812 26.4257 110.379

CAGE analysis