Hb_003475_020

Information

Type -
Description -
Location Contig3475: 36312-37460
Sequence    

Annotation

kegg
ID pop:POPTR_0001s47230g
description POPTRDRAFT_550633; hypothetical protein
nr
ID KDP32627.1
description hypothetical protein JCGZ_13177 [Jatropha curcas]
swissprot
ID Q84W65
description SufE-like protein 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=SUFE1 PE=1 SV=2
trembl
ID A0A067K929
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13177 PE=4 SV=1
Gene Ontology
ID GO:0009058
description sufe-like protein chloroplastic mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 026_L07.ab1: 36793-37513

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003475_020 0.0 - - hypothetical protein JCGZ_13177 [Jatropha curcas]
2 Hb_003994_110 0.0816521116 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646130 [Jatropha curcas]
3 Hb_001790_080 0.0817637104 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X3 [Jatropha curcas]
4 Hb_000676_200 0.0829441967 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]
5 Hb_000130_320 0.0833939203 desease resistance Gene Name: AAA PREDICTED: uncharacterized protein ycf45 [Jatropha curcas]
6 Hb_002232_390 0.0877375562 - - PREDICTED: uncharacterized protein LOC105635994 [Jatropha curcas]
7 Hb_002282_070 0.0881868221 - - PREDICTED: protein DJ-1 homolog C isoform X2 [Jatropha curcas]
8 Hb_000613_110 0.091717138 - - PREDICTED: uncharacterized protein LOC105641540 [Jatropha curcas]
9 Hb_001449_070 0.0981493488 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002631_250 0.0982923464 - - PREDICTED: pentatricopeptide repeat-containing protein At3g20730 [Jatropha curcas]
11 Hb_000331_490 0.0983164053 - - PREDICTED: radical S-adenosyl methionine domain-containing protein 1, mitochondrial [Jatropha curcas]
12 Hb_005250_010 0.0985160204 - - hypothetical protein JCGZ_15339 [Jatropha curcas]
13 Hb_013405_080 0.1001476048 - - PREDICTED: proline--tRNA ligase [Jatropha curcas]
14 Hb_000648_040 0.1007384983 - - unknown [Populus trichocarpa]
15 Hb_000087_140 0.1011316412 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27270 isoform X1 [Jatropha curcas]
16 Hb_002660_190 0.1025390956 - - PREDICTED: dnaJ protein P58IPK homolog [Jatropha curcas]
17 Hb_003089_020 0.103990343 - - PREDICTED: pentatricopeptide repeat-containing protein At2g18940, chloroplastic [Jatropha curcas]
18 Hb_009020_040 0.1044247523 - - PREDICTED: triacylglycerol lipase 1 isoform X1 [Jatropha curcas]
19 Hb_004218_190 0.1046162841 transcription factor TF Family: SNF2 PREDICTED: F-box protein At3g54460 isoform X1 [Jatropha curcas]
20 Hb_001936_090 0.1056089321 - - PREDICTED: BOI-related E3 ubiquitin-protein ligase 1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003475_020 Hb_003475_020 Hb_003994_110 Hb_003994_110 Hb_003475_020--Hb_003994_110 Hb_001790_080 Hb_001790_080 Hb_003475_020--Hb_001790_080 Hb_000676_200 Hb_000676_200 Hb_003475_020--Hb_000676_200 Hb_000130_320 Hb_000130_320 Hb_003475_020--Hb_000130_320 Hb_002232_390 Hb_002232_390 Hb_003475_020--Hb_002232_390 Hb_002282_070 Hb_002282_070 Hb_003475_020--Hb_002282_070 Hb_003544_010 Hb_003544_010 Hb_003994_110--Hb_003544_010 Hb_000613_110 Hb_000613_110 Hb_003994_110--Hb_000613_110 Hb_032920_050 Hb_032920_050 Hb_003994_110--Hb_032920_050 Hb_001824_090 Hb_001824_090 Hb_003994_110--Hb_001824_090 Hb_003106_190 Hb_003106_190 Hb_003994_110--Hb_003106_190 Hb_001790_080--Hb_000130_320 Hb_000349_240 Hb_000349_240 Hb_001790_080--Hb_000349_240 Hb_029584_070 Hb_029584_070 Hb_001790_080--Hb_029584_070 Hb_001163_060 Hb_001163_060 Hb_001790_080--Hb_001163_060 Hb_001936_090 Hb_001936_090 Hb_001790_080--Hb_001936_090 Hb_002374_250 Hb_002374_250 Hb_000676_200--Hb_002374_250 Hb_002631_250 Hb_002631_250 Hb_000676_200--Hb_002631_250 Hb_030131_030 Hb_030131_030 Hb_000676_200--Hb_030131_030 Hb_005282_020 Hb_005282_020 Hb_000676_200--Hb_005282_020 Hb_003878_080 Hb_003878_080 Hb_000676_200--Hb_003878_080 Hb_000648_040 Hb_000648_040 Hb_000130_320--Hb_000648_040 Hb_002758_010 Hb_002758_010 Hb_000130_320--Hb_002758_010 Hb_000130_320--Hb_032920_050 Hb_000749_090 Hb_000749_090 Hb_000130_320--Hb_000749_090 Hb_000130_320--Hb_001936_090 Hb_009178_060 Hb_009178_060 Hb_002232_390--Hb_009178_060 Hb_000645_280 Hb_000645_280 Hb_002232_390--Hb_000645_280 Hb_000684_210 Hb_000684_210 Hb_002232_390--Hb_000684_210 Hb_007763_070 Hb_007763_070 Hb_002232_390--Hb_007763_070 Hb_001449_070 Hb_001449_070 Hb_002232_390--Hb_001449_070 Hb_001427_040 Hb_001427_040 Hb_002282_070--Hb_001427_040 Hb_016461_030 Hb_016461_030 Hb_002282_070--Hb_016461_030 Hb_000345_370 Hb_000345_370 Hb_002282_070--Hb_000345_370 Hb_003777_020 Hb_003777_020 Hb_002282_070--Hb_003777_020 Hb_002685_060 Hb_002685_060 Hb_002282_070--Hb_002685_060 Hb_000144_060 Hb_000144_060 Hb_002282_070--Hb_000144_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.5789 12.543 15.4563 16.5152 14.1171 15.9065
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.2248 12.81 14.6023 15.1379 59.2752

CAGE analysis