Hb_002631_250

Information

Type -
Description -
Location Contig2631: 224499-226917
Sequence    

Annotation

kegg
ID rcu:RCOM_1574780
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012087458.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g20730 [Jatropha curcas]
swissprot
ID Q9LT48
description Pentatricopeptide repeat-containing protein At3g20730 OS=Arabidopsis thaliana GN=PCMP-E94 PE=2 SV=1
trembl
ID B9RI03
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1574780 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at3g20730

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27486: 225549-226395 , PASA_asmbl_27487: 226116-226251
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002631_250 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g20730 [Jatropha curcas]
2 Hb_030131_030 0.080948878 - - PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Jatropha curcas]
3 Hb_000676_200 0.094981632 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]
4 Hb_001790_080 0.0972339131 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X3 [Jatropha curcas]
5 Hb_003475_020 0.0982923464 - - hypothetical protein JCGZ_13177 [Jatropha curcas]
6 Hb_029584_070 0.1027491002 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like [Jatropha curcas]
7 Hb_001623_280 0.1030011074 - - PREDICTED: chaperonin CPN60-2, mitochondrial [Jatropha curcas]
8 Hb_005250_030 0.1040469581 - - PREDICTED: uncharacterized protein LOC105640177 [Jatropha curcas]
9 Hb_010998_020 0.106689454 - - ubiquitin ligase E3 alpha, putative [Ricinus communis]
10 Hb_004218_190 0.1070669587 transcription factor TF Family: SNF2 PREDICTED: F-box protein At3g54460 isoform X1 [Jatropha curcas]
11 Hb_007545_130 0.1070849326 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
12 Hb_002374_250 0.1078824907 - - conserved hypothetical protein [Ricinus communis]
13 Hb_013459_010 0.110382381 - - PREDICTED: uncharacterized protein LOC101491556 isoform X2 [Cicer arietinum]
14 Hb_005211_020 0.1104040531 - - PREDICTED: serine/threonine-protein kinase prpf4B-like isoform X1 [Jatropha curcas]
15 Hb_000110_270 0.1117553437 - - prp4, putative [Ricinus communis]
16 Hb_026053_040 0.1122730476 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005250_010 0.112761341 - - hypothetical protein JCGZ_15339 [Jatropha curcas]
18 Hb_005701_130 0.1132307912 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 3 [Jatropha curcas]
19 Hb_002973_110 0.1142850586 - - ABC transporter family protein [Hevea brasiliensis]
20 Hb_000815_170 0.115383054 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]

Gene co-expression network

sample Hb_002631_250 Hb_002631_250 Hb_030131_030 Hb_030131_030 Hb_002631_250--Hb_030131_030 Hb_000676_200 Hb_000676_200 Hb_002631_250--Hb_000676_200 Hb_001790_080 Hb_001790_080 Hb_002631_250--Hb_001790_080 Hb_003475_020 Hb_003475_020 Hb_002631_250--Hb_003475_020 Hb_029584_070 Hb_029584_070 Hb_002631_250--Hb_029584_070 Hb_001623_280 Hb_001623_280 Hb_002631_250--Hb_001623_280 Hb_030131_030--Hb_000676_200 Hb_002374_250 Hb_002374_250 Hb_030131_030--Hb_002374_250 Hb_008511_140 Hb_008511_140 Hb_030131_030--Hb_008511_140 Hb_000069_490 Hb_000069_490 Hb_030131_030--Hb_000069_490 Hb_003089_020 Hb_003089_020 Hb_030131_030--Hb_003089_020 Hb_000676_200--Hb_003475_020 Hb_000676_200--Hb_002374_250 Hb_005282_020 Hb_005282_020 Hb_000676_200--Hb_005282_020 Hb_003878_080 Hb_003878_080 Hb_000676_200--Hb_003878_080 Hb_000130_320 Hb_000130_320 Hb_001790_080--Hb_000130_320 Hb_000349_240 Hb_000349_240 Hb_001790_080--Hb_000349_240 Hb_001790_080--Hb_029584_070 Hb_001163_060 Hb_001163_060 Hb_001790_080--Hb_001163_060 Hb_001790_080--Hb_003475_020 Hb_001936_090 Hb_001936_090 Hb_001790_080--Hb_001936_090 Hb_003994_110 Hb_003994_110 Hb_003475_020--Hb_003994_110 Hb_003475_020--Hb_000130_320 Hb_002232_390 Hb_002232_390 Hb_003475_020--Hb_002232_390 Hb_002282_070 Hb_002282_070 Hb_003475_020--Hb_002282_070 Hb_029584_070--Hb_001936_090 Hb_000130_260 Hb_000130_260 Hb_029584_070--Hb_000130_260 Hb_003020_030 Hb_003020_030 Hb_029584_070--Hb_003020_030 Hb_000445_090 Hb_000445_090 Hb_029584_070--Hb_000445_090 Hb_029584_070--Hb_001163_060 Hb_000815_170 Hb_000815_170 Hb_001623_280--Hb_000815_170 Hb_000608_300 Hb_000608_300 Hb_001623_280--Hb_000608_300 Hb_026053_040 Hb_026053_040 Hb_001623_280--Hb_026053_040 Hb_000025_270 Hb_000025_270 Hb_001623_280--Hb_000025_270 Hb_004306_030 Hb_004306_030 Hb_001623_280--Hb_004306_030 Hb_004724_410 Hb_004724_410 Hb_001623_280--Hb_004724_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.629397 1.24813 1.12376 0.900957 1.23757 1.00259
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.424384 0.903509 0.928767 1.39221 3.93234

CAGE analysis