Hb_000130_260

Information

Type rubber biosynthesis
Description Gene Name: Dimethyallyltransferase
Location Contig130: 216160-227487
Sequence    

Annotation

kegg
ID rcu:RCOM_1520400
description ATP binding protein, putative (EC:2.5.1.8)
nr
ID XP_012078557.1
description PREDICTED: tRNA dimethylallyltransferase 9 isoform X1 [Jatropha curcas]
swissprot
ID Q9C5J6
description tRNA dimethylallyltransferase 9 OS=Arabidopsis thaliana GN=IPT9 PE=2 SV=1
trembl
ID A0A067KBU3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14706 PE=3 SV=1
Gene Ontology
ID GO:0005524
description trna dimethylallyltransferase 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08918: 219126-220609 , PASA_asmbl_08919: 220903-221312 , PASA_asmbl_08920: 227005-227390
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000130_260 0.0 rubber biosynthesis Gene Name: Dimethyallyltransferase PREDICTED: tRNA dimethylallyltransferase 9 isoform X1 [Jatropha curcas]
2 Hb_029584_070 0.0831815337 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like [Jatropha curcas]
3 Hb_001790_080 0.0869456397 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X3 [Jatropha curcas]
4 Hb_002758_010 0.0989132072 - - PREDICTED: ribonuclease II, chloroplastic/mitochondrial [Populus euphratica]
5 Hb_001936_090 0.1003387557 - - PREDICTED: BOI-related E3 ubiquitin-protein ligase 1-like isoform X1 [Jatropha curcas]
6 Hb_001080_090 0.1006056329 - - PREDICTED: BTB/POZ domain-containing protein At2g30600 isoform X1 [Jatropha curcas]
7 Hb_004899_260 0.106719067 - - PREDICTED: uncharacterized protein LOC105638006 [Jatropha curcas]
8 Hb_000130_320 0.1084599651 desease resistance Gene Name: AAA PREDICTED: uncharacterized protein ycf45 [Jatropha curcas]
9 Hb_000087_140 0.1159554215 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27270 isoform X1 [Jatropha curcas]
10 Hb_000648_040 0.1168146058 - - unknown [Populus trichocarpa]
11 Hb_093458_060 0.1179815143 - - PREDICTED: uncharacterized protein LOC105633194 [Jatropha curcas]
12 Hb_000349_240 0.1204123208 - - PREDICTED: probable aminotransferase ACS10 isoform X1 [Jatropha curcas]
13 Hb_021346_030 0.1228684727 - - PREDICTED: uncharacterized protein LOC105141875 [Populus euphratica]
14 Hb_000482_190 0.1237909767 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
15 Hb_036790_080 0.1239461656 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Jatropha curcas]
16 Hb_002217_260 0.1240071786 - - PREDICTED: uncharacterized protein LOC105643577 [Jatropha curcas]
17 Hb_001662_140 0.1244777133 - - PREDICTED: ankyrin repeat domain-containing protein, chloroplastic [Jatropha curcas]
18 Hb_007769_040 0.1249820363 - - PREDICTED: probable threonine--tRNA ligase, cytoplasmic [Jatropha curcas]
19 Hb_003475_020 0.1250063868 - - hypothetical protein JCGZ_13177 [Jatropha curcas]
20 Hb_000834_200 0.1253639849 - - PREDICTED: splicing factor, arginine/serine-rich 19 [Jatropha curcas]

Gene co-expression network

sample Hb_000130_260 Hb_000130_260 Hb_029584_070 Hb_029584_070 Hb_000130_260--Hb_029584_070 Hb_001790_080 Hb_001790_080 Hb_000130_260--Hb_001790_080 Hb_002758_010 Hb_002758_010 Hb_000130_260--Hb_002758_010 Hb_001936_090 Hb_001936_090 Hb_000130_260--Hb_001936_090 Hb_001080_090 Hb_001080_090 Hb_000130_260--Hb_001080_090 Hb_004899_260 Hb_004899_260 Hb_000130_260--Hb_004899_260 Hb_029584_070--Hb_001936_090 Hb_029584_070--Hb_001790_080 Hb_003020_030 Hb_003020_030 Hb_029584_070--Hb_003020_030 Hb_000445_090 Hb_000445_090 Hb_029584_070--Hb_000445_090 Hb_001163_060 Hb_001163_060 Hb_029584_070--Hb_001163_060 Hb_000130_320 Hb_000130_320 Hb_001790_080--Hb_000130_320 Hb_000349_240 Hb_000349_240 Hb_001790_080--Hb_000349_240 Hb_001790_080--Hb_001163_060 Hb_003475_020 Hb_003475_020 Hb_001790_080--Hb_003475_020 Hb_001790_080--Hb_001936_090 Hb_002758_010--Hb_000130_320 Hb_002205_230 Hb_002205_230 Hb_002758_010--Hb_002205_230 Hb_005731_160 Hb_005731_160 Hb_002758_010--Hb_005731_160 Hb_002758_010--Hb_001936_090 Hb_005253_030 Hb_005253_030 Hb_002758_010--Hb_005253_030 Hb_001589_010 Hb_001589_010 Hb_002758_010--Hb_001589_010 Hb_000720_050 Hb_000720_050 Hb_001936_090--Hb_000720_050 Hb_001936_090--Hb_000130_320 Hb_188281_040 Hb_188281_040 Hb_001936_090--Hb_188281_040 Hb_001347_060 Hb_001347_060 Hb_001936_090--Hb_001347_060 Hb_001080_090--Hb_004899_260 Hb_000282_080 Hb_000282_080 Hb_001080_090--Hb_000282_080 Hb_001080_090--Hb_001790_080 Hb_001080_090--Hb_001589_010 Hb_001080_090--Hb_002758_010 Hb_007763_070 Hb_007763_070 Hb_004899_260--Hb_007763_070 Hb_006816_370 Hb_006816_370 Hb_004899_260--Hb_006816_370 Hb_004899_260--Hb_001790_080 Hb_000538_280 Hb_000538_280 Hb_004899_260--Hb_000538_280 Hb_000665_130 Hb_000665_130 Hb_004899_260--Hb_000665_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.76971 2.31808 1.90448 1.50887 2.64857 2.52596
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.60547 3.03144 1.254 1.37397 6.69415

CAGE analysis