Hb_005253_030

Information

Type -
Description -
Location Contig5253: 29839-35161
Sequence    

Annotation

kegg
ID rcu:RCOM_1543770
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002515794.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q0WMY5
description Pentatricopeptide repeat-containing protein At5g04810, chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1
trembl
ID B9RPX5
description Pentatricopeptide repeat-containing protein, putative (Fragment) OS=Ricinus communis GN=RCOM_1543770 PE=4 SV=1
Gene Ontology
ID GO:0000166
description pentatricopeptide repeat-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46973: 30143-33612
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005253_030 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_036790_080 0.0556495721 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Jatropha curcas]
3 Hb_001008_120 0.0698034104 desease resistance Gene Name: PEX-1N peroxisome biogenesis factor, putative [Ricinus communis]
4 Hb_000261_060 0.0734468668 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Jatropha curcas]
5 Hb_001936_090 0.0809951933 - - PREDICTED: BOI-related E3 ubiquitin-protein ligase 1-like isoform X1 [Jatropha curcas]
6 Hb_000465_190 0.081331726 - - PREDICTED: E3 ubiquitin-protein ligase HOS1 isoform X2 [Jatropha curcas]
7 Hb_002758_010 0.0848790288 - - PREDICTED: ribonuclease II, chloroplastic/mitochondrial [Populus euphratica]
8 Hb_000720_050 0.0849048757 - - PREDICTED: uncharacterized protein LOC105645857 isoform X1 [Jatropha curcas]
9 Hb_003020_030 0.0867138518 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
10 Hb_005116_050 0.0879819636 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02820, mitochondrial isoform X1 [Jatropha curcas]
11 Hb_001369_750 0.0881602694 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
12 Hb_000317_050 0.0889143493 - - formiminotransferase-cyclodeaminase, putative [Ricinus communis]
13 Hb_032920_050 0.0899205485 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Jatropha curcas]
14 Hb_004310_140 0.0909672863 - - PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
15 Hb_003376_230 0.0918543735 - - PREDICTED: dnaJ protein P58IPK homolog [Jatropha curcas]
16 Hb_002849_100 0.093732332 - - PREDICTED: mechanosensitive ion channel protein 1, mitochondrial [Jatropha curcas]
17 Hb_000130_320 0.0941620523 desease resistance Gene Name: AAA PREDICTED: uncharacterized protein ycf45 [Jatropha curcas]
18 Hb_001435_030 0.0949004087 - - PREDICTED: uncharacterized protein LOC105645073 [Jatropha curcas]
19 Hb_003153_010 0.0950122775 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
20 Hb_035755_010 0.0955218524 - - unknown [Populus trichocarpa]

Gene co-expression network

sample Hb_005253_030 Hb_005253_030 Hb_036790_080 Hb_036790_080 Hb_005253_030--Hb_036790_080 Hb_001008_120 Hb_001008_120 Hb_005253_030--Hb_001008_120 Hb_000261_060 Hb_000261_060 Hb_005253_030--Hb_000261_060 Hb_001936_090 Hb_001936_090 Hb_005253_030--Hb_001936_090 Hb_000465_190 Hb_000465_190 Hb_005253_030--Hb_000465_190 Hb_002758_010 Hb_002758_010 Hb_005253_030--Hb_002758_010 Hb_032920_050 Hb_032920_050 Hb_036790_080--Hb_032920_050 Hb_036790_080--Hb_000261_060 Hb_003020_030 Hb_003020_030 Hb_036790_080--Hb_003020_030 Hb_000130_320 Hb_000130_320 Hb_036790_080--Hb_000130_320 Hb_001435_030 Hb_001435_030 Hb_036790_080--Hb_001435_030 Hb_028912_050 Hb_028912_050 Hb_001008_120--Hb_028912_050 Hb_005736_020 Hb_005736_020 Hb_001008_120--Hb_005736_020 Hb_002263_020 Hb_002263_020 Hb_001008_120--Hb_002263_020 Hb_001157_240 Hb_001157_240 Hb_001008_120--Hb_001157_240 Hb_000720_050 Hb_000720_050 Hb_001008_120--Hb_000720_050 Hb_005686_090 Hb_005686_090 Hb_001008_120--Hb_005686_090 Hb_007922_020 Hb_007922_020 Hb_000261_060--Hb_007922_020 Hb_001369_750 Hb_001369_750 Hb_000261_060--Hb_001369_750 Hb_000261_060--Hb_001008_120 Hb_007317_140 Hb_007317_140 Hb_000261_060--Hb_007317_140 Hb_029584_070 Hb_029584_070 Hb_001936_090--Hb_029584_070 Hb_001936_090--Hb_000720_050 Hb_001936_090--Hb_002758_010 Hb_001936_090--Hb_000130_320 Hb_188281_040 Hb_188281_040 Hb_001936_090--Hb_188281_040 Hb_001347_060 Hb_001347_060 Hb_001936_090--Hb_001347_060 Hb_000465_190--Hb_002758_010 Hb_005116_050 Hb_005116_050 Hb_000465_190--Hb_005116_050 Hb_000120_290 Hb_000120_290 Hb_000465_190--Hb_000120_290 Hb_002205_230 Hb_002205_230 Hb_000465_190--Hb_002205_230 Hb_000340_100 Hb_000340_100 Hb_000465_190--Hb_000340_100 Hb_002758_010--Hb_000130_320 Hb_002758_010--Hb_002205_230 Hb_005731_160 Hb_005731_160 Hb_002758_010--Hb_005731_160 Hb_001589_010 Hb_001589_010 Hb_002758_010--Hb_001589_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.04466 4.69355 5.0669 4.2904 6.6245 6.69616
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.46121 6.59382 5.91668 6.90943 13.9303

CAGE analysis