Hb_000465_190

Information

Type -
Description -
Location Contig465: 129240-138159
Sequence    

Annotation

kegg
ID rcu:RCOM_0005420
description hypothetical protein
nr
ID XP_012070039.1
description PREDICTED: E3 ubiquitin-protein ligase HOS1 isoform X2 [Jatropha curcas]
swissprot
ID Q84JU6
description E3 ubiquitin-protein ligase HOS1 OS=Arabidopsis thaliana GN=HOS1 PE=1 SV=1
trembl
ID A0A067KUT4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03438 PE=4 SV=1
Gene Ontology
ID GO:0006355
description e3 ubiquitin-protein ligase hos1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43980: 132595-132769
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000465_190 0.0 - - PREDICTED: E3 ubiquitin-protein ligase HOS1 isoform X2 [Jatropha curcas]
2 Hb_005253_030 0.081331726 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_002758_010 0.0975063921 - - PREDICTED: ribonuclease II, chloroplastic/mitochondrial [Populus euphratica]
4 Hb_005116_050 0.0989273045 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02820, mitochondrial isoform X1 [Jatropha curcas]
5 Hb_000120_290 0.1019074352 - - PREDICTED: N-acylphosphatidylethanolamine synthase isoform X1 [Jatropha curcas]
6 Hb_002205_230 0.1032918355 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
7 Hb_000340_100 0.1036151023 - - PREDICTED: protein PALE CRESS, chloroplastic [Jatropha curcas]
8 Hb_002811_130 0.1038754458 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
9 Hb_012627_040 0.1060061512 - - PREDICTED: uncharacterized protein LOC105641988 [Jatropha curcas]
10 Hb_001589_010 0.1079894384 - - PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]
11 Hb_000317_050 0.1081627906 - - formiminotransferase-cyclodeaminase, putative [Ricinus communis]
12 Hb_012055_030 0.1091298015 - - Protein FRIGIDA, putative [Ricinus communis]
13 Hb_004450_040 0.1110538132 - - PREDICTED: DNA ligase 1 [Jatropha curcas]
14 Hb_005731_160 0.1124358001 - - ABC transporter family protein [Hevea brasiliensis]
15 Hb_036790_080 0.1131389251 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Jatropha curcas]
16 Hb_004310_140 0.1152570896 - - PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
17 Hb_008033_040 0.1168648384 - - PREDICTED: MATE efflux family protein 3, chloroplastic [Jatropha curcas]
18 Hb_000130_220 0.1171662697 - - PREDICTED: uncharacterized protein At3g15000, mitochondrial-like [Jatropha curcas]
19 Hb_000075_040 0.1179469594 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
20 Hb_000059_380 0.1182568285 - - PREDICTED: uncharacterized protein LOC105648668 [Jatropha curcas]

Gene co-expression network

sample Hb_000465_190 Hb_000465_190 Hb_005253_030 Hb_005253_030 Hb_000465_190--Hb_005253_030 Hb_002758_010 Hb_002758_010 Hb_000465_190--Hb_002758_010 Hb_005116_050 Hb_005116_050 Hb_000465_190--Hb_005116_050 Hb_000120_290 Hb_000120_290 Hb_000465_190--Hb_000120_290 Hb_002205_230 Hb_002205_230 Hb_000465_190--Hb_002205_230 Hb_000340_100 Hb_000340_100 Hb_000465_190--Hb_000340_100 Hb_036790_080 Hb_036790_080 Hb_005253_030--Hb_036790_080 Hb_001008_120 Hb_001008_120 Hb_005253_030--Hb_001008_120 Hb_000261_060 Hb_000261_060 Hb_005253_030--Hb_000261_060 Hb_001936_090 Hb_001936_090 Hb_005253_030--Hb_001936_090 Hb_005253_030--Hb_002758_010 Hb_000130_320 Hb_000130_320 Hb_002758_010--Hb_000130_320 Hb_002758_010--Hb_002205_230 Hb_005731_160 Hb_005731_160 Hb_002758_010--Hb_005731_160 Hb_002758_010--Hb_001936_090 Hb_001589_010 Hb_001589_010 Hb_002758_010--Hb_001589_010 Hb_000130_220 Hb_000130_220 Hb_005116_050--Hb_000130_220 Hb_001157_240 Hb_001157_240 Hb_005116_050--Hb_001157_240 Hb_000482_040 Hb_000482_040 Hb_005116_050--Hb_000482_040 Hb_001163_060 Hb_001163_060 Hb_005116_050--Hb_001163_060 Hb_008033_040 Hb_008033_040 Hb_005116_050--Hb_008033_040 Hb_005736_020 Hb_005736_020 Hb_005116_050--Hb_005736_020 Hb_002811_010 Hb_002811_010 Hb_000120_290--Hb_002811_010 Hb_000120_290--Hb_005731_160 Hb_012627_040 Hb_012627_040 Hb_000120_290--Hb_012627_040 Hb_002811_130 Hb_002811_130 Hb_000120_290--Hb_002811_130 Hb_003376_230 Hb_003376_230 Hb_000120_290--Hb_003376_230 Hb_000749_010 Hb_000749_010 Hb_002205_230--Hb_000749_010 Hb_000059_380 Hb_000059_380 Hb_002205_230--Hb_000059_380 Hb_000599_270 Hb_000599_270 Hb_002205_230--Hb_000599_270 Hb_002205_230--Hb_001589_010 Hb_021374_030 Hb_021374_030 Hb_002205_230--Hb_021374_030 Hb_000797_040 Hb_000797_040 Hb_002205_230--Hb_000797_040 Hb_000003_710 Hb_000003_710 Hb_000340_100--Hb_000003_710 Hb_003747_230 Hb_003747_230 Hb_000340_100--Hb_003747_230 Hb_001629_080 Hb_001629_080 Hb_000340_100--Hb_001629_080 Hb_000340_100--Hb_005116_050 Hb_002078_340 Hb_002078_340 Hb_000340_100--Hb_002078_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.40319 1.28101 1.74361 0.782076 1.33528 1.54692
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.30952 2.49893 1.48557 2.18677 3.79797

CAGE analysis