Hb_000482_040

Information

Type -
Description -
Location Contig482: 31334-45124
Sequence    

Annotation

kegg
ID rcu:RCOM_0797270
description Protein YME1, putative (EC:3.6.4.3)
nr
ID XP_002516427.1
description Protein YME1, putative [Ricinus communis]
swissprot
ID O80983
description ATP-dependent zinc metalloprotease FTSH 4, mitochondrial OS=Arabidopsis thaliana GN=FTSH4 PE=1 SV=2
trembl
ID B9RRQ8
description Protein YME1, putative OS=Ricinus communis GN=RCOM_0797270 PE=3 SV=1
Gene Ontology
ID GO:0009536
description atp-dependent zinc metalloprotease ftsh mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44769: 31420-37078 , PASA_asmbl_44770: 40078-42074 , PASA_asmbl_44773: 44317-44707 , PASA_asmbl_44774: 44717-45174
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000482_040 0.0 - - Protein YME1, putative [Ricinus communis]
2 Hb_009778_060 0.0675581058 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
3 Hb_002686_090 0.0754005412 - - PREDICTED: pentatricopeptide repeat-containing protein At4g13650 [Jatropha curcas]
4 Hb_000635_060 0.0755176836 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
5 Hb_002078_340 0.0788563256 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
6 Hb_005116_050 0.079929899 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02820, mitochondrial isoform X1 [Jatropha curcas]
7 Hb_001163_060 0.0819076586 - - neutral/alkaline invertase [Manihot esculenta]
8 Hb_000130_220 0.0821219361 - - PREDICTED: uncharacterized protein At3g15000, mitochondrial-like [Jatropha curcas]
9 Hb_032202_040 0.0848736365 - - PREDICTED: phospholipase D beta 2 [Jatropha curcas]
10 Hb_000504_180 0.0863235942 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
11 Hb_001723_060 0.0890439185 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase PREDICTED: LOW QUALITY PROTEIN: dihydrolipoyl dehydrogenase 2, mitochondrial [Populus euphratica]
12 Hb_000640_040 0.0891811273 - - PREDICTED: bromodomain and WD repeat-containing protein 1 isoform X2 [Jatropha curcas]
13 Hb_000204_120 0.089294051 - - PREDICTED: uncharacterized protein LOC105639239 [Jatropha curcas]
14 Hb_001226_140 0.0898323574 - - PREDICTED: protein phosphatase 2C 77-like [Jatropha curcas]
15 Hb_001157_240 0.0906032525 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
16 Hb_001716_040 0.0909545939 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
17 Hb_000046_540 0.0911562503 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Populus euphratica]
18 Hb_002769_030 0.0912947549 - - PREDICTED: MATE efflux family protein 4, chloroplastic-like [Jatropha curcas]
19 Hb_000805_100 0.0913980322 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 10, mitochondrial isoform X1 [Jatropha curcas]
20 Hb_001818_100 0.0915059309 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]

Gene co-expression network

sample Hb_000482_040 Hb_000482_040 Hb_009778_060 Hb_009778_060 Hb_000482_040--Hb_009778_060 Hb_002686_090 Hb_002686_090 Hb_000482_040--Hb_002686_090 Hb_000635_060 Hb_000635_060 Hb_000482_040--Hb_000635_060 Hb_002078_340 Hb_002078_340 Hb_000482_040--Hb_002078_340 Hb_005116_050 Hb_005116_050 Hb_000482_040--Hb_005116_050 Hb_001163_060 Hb_001163_060 Hb_000482_040--Hb_001163_060 Hb_001214_050 Hb_001214_050 Hb_009778_060--Hb_001214_050 Hb_001195_450 Hb_001195_450 Hb_009778_060--Hb_001195_450 Hb_001723_060 Hb_001723_060 Hb_009778_060--Hb_001723_060 Hb_002374_250 Hb_002374_250 Hb_009778_060--Hb_002374_250 Hb_009778_060--Hb_000635_060 Hb_000640_040 Hb_000640_040 Hb_002686_090--Hb_000640_040 Hb_001865_070 Hb_001865_070 Hb_002686_090--Hb_001865_070 Hb_000204_120 Hb_000204_120 Hb_002686_090--Hb_000204_120 Hb_001716_040 Hb_001716_040 Hb_002686_090--Hb_001716_040 Hb_002542_110 Hb_002542_110 Hb_002686_090--Hb_002542_110 Hb_000170_130 Hb_000170_130 Hb_002686_090--Hb_000170_130 Hb_002539_070 Hb_002539_070 Hb_000635_060--Hb_002539_070 Hb_000635_060--Hb_001716_040 Hb_001478_010 Hb_001478_010 Hb_000635_060--Hb_001478_010 Hb_000635_060--Hb_002686_090 Hb_000504_180 Hb_000504_180 Hb_000635_060--Hb_000504_180 Hb_000046_540 Hb_000046_540 Hb_002078_340--Hb_000046_540 Hb_012150_030 Hb_012150_030 Hb_002078_340--Hb_012150_030 Hb_003153_010 Hb_003153_010 Hb_002078_340--Hb_003153_010 Hb_003376_230 Hb_003376_230 Hb_002078_340--Hb_003376_230 Hb_000364_050 Hb_000364_050 Hb_002078_340--Hb_000364_050 Hb_000130_220 Hb_000130_220 Hb_005116_050--Hb_000130_220 Hb_001157_240 Hb_001157_240 Hb_005116_050--Hb_001157_240 Hb_005116_050--Hb_001163_060 Hb_008033_040 Hb_008033_040 Hb_005116_050--Hb_008033_040 Hb_005736_020 Hb_005736_020 Hb_005116_050--Hb_005736_020 Hb_000445_090 Hb_000445_090 Hb_001163_060--Hb_000445_090 Hb_000193_330 Hb_000193_330 Hb_001163_060--Hb_000193_330 Hb_002769_030 Hb_002769_030 Hb_001163_060--Hb_002769_030 Hb_000365_240 Hb_000365_240 Hb_001163_060--Hb_000365_240 Hb_000599_270 Hb_000599_270 Hb_001163_060--Hb_000599_270 Hb_004003_040 Hb_004003_040 Hb_001163_060--Hb_004003_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.45587 14.7603 13.9422 14.8025 8.91372 9.69109
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.8232 14.7761 22.6404 14.9186 34.6511

CAGE analysis