Hb_001163_060

Information

Type -
Description -
Location Contig1163: 54998-61267
Sequence    

Annotation

kegg
ID rcu:RCOM_0792880
description beta-fructofuranosidase, putative
nr
ID AHA82517.1
description neutral/alkaline invertase [Manihot esculenta]
swissprot
ID Q9FK88
description Alkaline/neutral invertase E, chloroplastic OS=Arabidopsis thaliana GN=INVE PE=1 SV=1
trembl
ID V5N4C3
description Neutral/alkaline invertase OS=Manihot esculenta GN=NINV6 PE=2 SV=1
Gene Ontology
ID GO:0033926
description alkaline neutral invertase cinv1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05023: 48259-54123 , PASA_asmbl_05025: 55063-56315 , PASA_asmbl_05026: 56365-61124
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001163_060 0.0 - - neutral/alkaline invertase [Manihot esculenta]
2 Hb_000445_090 0.0669121156 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH2 [Jatropha curcas]
3 Hb_000193_330 0.0699314699 - - PREDICTED: formin-like protein 20 [Jatropha curcas]
4 Hb_002769_030 0.0706646398 - - PREDICTED: MATE efflux family protein 4, chloroplastic-like [Jatropha curcas]
5 Hb_000365_240 0.0751530023 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33A-like [Jatropha curcas]
6 Hb_000599_270 0.0756997656 - - PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta isoform X3 [Jatropha curcas]
7 Hb_004003_040 0.0769165131 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
8 Hb_001790_080 0.0772830687 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X3 [Jatropha curcas]
9 Hb_008959_010 0.0782954932 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007763_070 0.0795385459 - - PREDICTED: pentatricopeptide repeat-containing protein At1g71460, chloroplastic [Jatropha curcas]
11 Hb_001936_090 0.0806171664 - - PREDICTED: BOI-related E3 ubiquitin-protein ligase 1-like isoform X1 [Jatropha curcas]
12 Hb_005116_050 0.0812554028 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02820, mitochondrial isoform X1 [Jatropha curcas]
13 Hb_000482_040 0.0819076586 - - Protein YME1, putative [Ricinus communis]
14 Hb_000046_540 0.0827842579 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Populus euphratica]
15 Hb_001157_240 0.0834764479 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
16 Hb_002078_340 0.0852438897 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
17 Hb_000039_150 0.086322576 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
18 Hb_003153_010 0.0875883315 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
19 Hb_006913_020 0.0876418355 - - PREDICTED: uncharacterized protein LOC105649145 isoform X1 [Jatropha curcas]
20 Hb_002758_010 0.0878379581 - - PREDICTED: ribonuclease II, chloroplastic/mitochondrial [Populus euphratica]

Gene co-expression network

sample Hb_001163_060 Hb_001163_060 Hb_000445_090 Hb_000445_090 Hb_001163_060--Hb_000445_090 Hb_000193_330 Hb_000193_330 Hb_001163_060--Hb_000193_330 Hb_002769_030 Hb_002769_030 Hb_001163_060--Hb_002769_030 Hb_000365_240 Hb_000365_240 Hb_001163_060--Hb_000365_240 Hb_000599_270 Hb_000599_270 Hb_001163_060--Hb_000599_270 Hb_004003_040 Hb_004003_040 Hb_001163_060--Hb_004003_040 Hb_000445_090--Hb_000193_330 Hb_000635_060 Hb_000635_060 Hb_000445_090--Hb_000635_060 Hb_000181_340 Hb_000181_340 Hb_000445_090--Hb_000181_340 Hb_009288_020 Hb_009288_020 Hb_000445_090--Hb_009288_020 Hb_002539_070 Hb_002539_070 Hb_000445_090--Hb_002539_070 Hb_000538_280 Hb_000538_280 Hb_000193_330--Hb_000538_280 Hb_003040_050 Hb_003040_050 Hb_000193_330--Hb_003040_050 Hb_000193_330--Hb_000181_340 Hb_000193_330--Hb_004003_040 Hb_007763_070 Hb_007763_070 Hb_000193_330--Hb_007763_070 Hb_000039_150 Hb_000039_150 Hb_002769_030--Hb_000039_150 Hb_008959_010 Hb_008959_010 Hb_002769_030--Hb_008959_010 Hb_003153_010 Hb_003153_010 Hb_002769_030--Hb_003153_010 Hb_001629_030 Hb_001629_030 Hb_002769_030--Hb_001629_030 Hb_004108_160 Hb_004108_160 Hb_002769_030--Hb_004108_160 Hb_002055_040 Hb_002055_040 Hb_000365_240--Hb_002055_040 Hb_000922_030 Hb_000922_030 Hb_000365_240--Hb_000922_030 Hb_001157_240 Hb_001157_240 Hb_000365_240--Hb_001157_240 Hb_000365_240--Hb_002539_070 Hb_004218_190 Hb_004218_190 Hb_000365_240--Hb_004218_190 Hb_021374_030 Hb_021374_030 Hb_000599_270--Hb_021374_030 Hb_002581_010 Hb_002581_010 Hb_000599_270--Hb_002581_010 Hb_006913_020 Hb_006913_020 Hb_000599_270--Hb_006913_020 Hb_007413_010 Hb_007413_010 Hb_000599_270--Hb_007413_010 Hb_017469_110 Hb_017469_110 Hb_000599_270--Hb_017469_110 Hb_002205_230 Hb_002205_230 Hb_000599_270--Hb_002205_230 Hb_000346_060 Hb_000346_060 Hb_004003_040--Hb_000346_060 Hb_002027_080 Hb_002027_080 Hb_004003_040--Hb_002027_080 Hb_000441_090 Hb_000441_090 Hb_004003_040--Hb_000441_090 Hb_000797_040 Hb_000797_040 Hb_004003_040--Hb_000797_040 Hb_000731_010 Hb_000731_010 Hb_004003_040--Hb_000731_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.92766 12.6353 14.8606 10.6815 10.2336 12.204
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.56652 11.2919 14.1773 11.4633 29.0031

CAGE analysis