Hb_001629_080

Information

Type -
Description -
Location Contig1629: 55476-60109
Sequence    

Annotation

kegg
ID pop:POPTR_0011s12610g
description POPTRDRAFT_823015; hypothetical protein
nr
ID XP_002316930.1
description hypothetical protein POPTR_0011s12610g [Populus trichocarpa]
swissprot
ID P94479
description Uncharacterized protein YnbB OS=Bacillus subtilis (strain 168) GN=ynbB PE=4 SV=2
trembl
ID A9PET3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s12610g PE=2 SV=1
Gene Ontology
ID GO:0016829
description cystathionine beta-lyase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14785: 58543-59876
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001629_080 0.0 - - hypothetical protein POPTR_0011s12610g [Populus trichocarpa]
2 Hb_002600_090 0.0851537164 - - ATP binding protein, putative [Ricinus communis]
3 Hb_001348_170 0.0865099237 - - PREDICTED: filament-like plant protein isoform X2 [Jatropha curcas]
4 Hb_010368_010 0.0892019607 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
5 Hb_004837_270 0.0895654925 - - PREDICTED: cinnamoyl-CoA reductase 1 [Jatropha curcas]
6 Hb_005588_080 0.0902618318 - - PREDICTED: uncharacterized protein LOC105633661 [Jatropha curcas]
7 Hb_002686_170 0.0912648294 - - PREDICTED: uncharacterized protein LOC105632645 isoform X1 [Jatropha curcas]
8 Hb_003082_030 0.091631411 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]
9 Hb_000815_070 0.0969466964 - - PREDICTED: methyltransferase-like protein 7A [Jatropha curcas]
10 Hb_107879_010 0.0971666521 - - phosphoglycerate mutase, putative [Ricinus communis]
11 Hb_002490_020 0.0994554908 - - peptidyl-tRNA hydrolase family protein [Populus trichocarpa]
12 Hb_002006_030 0.1007526079 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER [Jatropha curcas]
13 Hb_000059_380 0.1009027477 - - PREDICTED: uncharacterized protein LOC105648668 [Jatropha curcas]
14 Hb_000869_020 0.1010400614 - - PREDICTED: uncharacterized protein LOC105641036 [Jatropha curcas]
15 Hb_011716_130 0.1010514572 - - PREDICTED: probable acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, mitochondrial isoform X5 [Populus euphratica]
16 Hb_000227_170 0.1017921348 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
17 Hb_003513_010 0.1034015152 - - Structural maintenance of chromosome 1 protein, putative [Ricinus communis]
18 Hb_004195_270 0.1077454395 - - Ubiquitin-conjugating enzyme 16 [Theobroma cacao]
19 Hb_000245_220 0.1078699407 - - PREDICTED: uncharacterized protein LOC105635566 [Jatropha curcas]
20 Hb_000035_500 0.1080128103 - - PREDICTED: ADP-ribosylation factor 1 isoform X2 [Tarenaya hassleriana]

Gene co-expression network

sample Hb_001629_080 Hb_001629_080 Hb_002600_090 Hb_002600_090 Hb_001629_080--Hb_002600_090 Hb_001348_170 Hb_001348_170 Hb_001629_080--Hb_001348_170 Hb_010368_010 Hb_010368_010 Hb_001629_080--Hb_010368_010 Hb_004837_270 Hb_004837_270 Hb_001629_080--Hb_004837_270 Hb_005588_080 Hb_005588_080 Hb_001629_080--Hb_005588_080 Hb_002686_170 Hb_002686_170 Hb_001629_080--Hb_002686_170 Hb_000985_030 Hb_000985_030 Hb_002600_090--Hb_000985_030 Hb_001971_010 Hb_001971_010 Hb_002600_090--Hb_001971_010 Hb_000599_250 Hb_000599_250 Hb_002600_090--Hb_000599_250 Hb_000260_030 Hb_000260_030 Hb_002600_090--Hb_000260_030 Hb_001711_020 Hb_001711_020 Hb_002600_090--Hb_001711_020 Hb_001489_080 Hb_001489_080 Hb_002600_090--Hb_001489_080 Hb_001348_170--Hb_004837_270 Hb_001348_170--Hb_002686_170 Hb_000621_070 Hb_000621_070 Hb_001348_170--Hb_000621_070 Hb_000035_500 Hb_000035_500 Hb_001348_170--Hb_000035_500 Hb_004070_020 Hb_004070_020 Hb_001348_170--Hb_004070_020 Hb_013358_040 Hb_013358_040 Hb_010368_010--Hb_013358_040 Hb_008013_050 Hb_008013_050 Hb_010368_010--Hb_008013_050 Hb_000699_030 Hb_000699_030 Hb_010368_010--Hb_000699_030 Hb_000729_030 Hb_000729_030 Hb_010368_010--Hb_000729_030 Hb_000336_150 Hb_000336_150 Hb_010368_010--Hb_000336_150 Hb_000069_380 Hb_000069_380 Hb_010368_010--Hb_000069_380 Hb_004837_270--Hb_002686_170 Hb_000110_310 Hb_000110_310 Hb_004837_270--Hb_000110_310 Hb_001799_030 Hb_001799_030 Hb_004837_270--Hb_001799_030 Hb_000731_160 Hb_000731_160 Hb_004837_270--Hb_000731_160 Hb_000230_400 Hb_000230_400 Hb_005588_080--Hb_000230_400 Hb_000059_380 Hb_000059_380 Hb_005588_080--Hb_000059_380 Hb_003428_010 Hb_003428_010 Hb_005588_080--Hb_003428_010 Hb_003513_010 Hb_003513_010 Hb_005588_080--Hb_003513_010 Hb_003861_060 Hb_003861_060 Hb_005588_080--Hb_003861_060 Hb_007007_120 Hb_007007_120 Hb_005588_080--Hb_007007_120 Hb_001981_030 Hb_001981_030 Hb_002686_170--Hb_001981_030 Hb_002197_020 Hb_002197_020 Hb_002686_170--Hb_002197_020 Hb_002686_170--Hb_010368_010 Hb_002876_230 Hb_002876_230 Hb_002686_170--Hb_002876_230 Hb_021576_100 Hb_021576_100 Hb_002686_170--Hb_021576_100 Hb_005000_170 Hb_005000_170 Hb_002686_170--Hb_005000_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.77214 1.44686 3.62205 1.68445 1.97159 1.57448
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.83241 2.74915 2.59098 2.43081 3.16522

CAGE analysis