Hb_001348_170

Information

Type -
Description -
Location Contig1348: 143546-148477
Sequence    

Annotation

kegg
ID rcu:RCOM_1030810
description DNA double-strand break repair rad50 ATPase, putative
nr
ID XP_012078245.1
description PREDICTED: filament-like plant protein isoform X2 [Jatropha curcas]
swissprot
ID Q8LLE5
description Filament-like plant protein (Fragment) OS=Solanum lycopersicum GN=FPP PE=1 SV=1
trembl
ID A0A067KCT1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12095 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09820: 143640-148335 , PASA_asmbl_09821: 144473-148335 , PASA_asmbl_09822: 145334-145658
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001348_170 0.0 - - PREDICTED: filament-like plant protein isoform X2 [Jatropha curcas]
2 Hb_004837_270 0.0709097857 - - PREDICTED: cinnamoyl-CoA reductase 1 [Jatropha curcas]
3 Hb_001629_080 0.0865099237 - - hypothetical protein POPTR_0011s12610g [Populus trichocarpa]
4 Hb_002686_170 0.0885953592 - - PREDICTED: uncharacterized protein LOC105632645 isoform X1 [Jatropha curcas]
5 Hb_000621_070 0.1052960673 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
6 Hb_000035_500 0.1133654157 - - PREDICTED: ADP-ribosylation factor 1 isoform X2 [Tarenaya hassleriana]
7 Hb_004070_020 0.1139858655 - - rhythmically-expressed protein 2 protein, putative [Ricinus communis]
8 Hb_005542_130 0.1149089119 - - PREDICTED: uncharacterized protein LOC105649174 [Jatropha curcas]
9 Hb_000731_160 0.1168538966 - - PREDICTED: adenosine deaminase-like protein [Jatropha curcas]
10 Hb_000381_120 0.1177793709 - - PREDICTED: uncharacterized protein LOC105648175 [Jatropha curcas]
11 Hb_003050_270 0.1178366177 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic [Jatropha curcas]
12 Hb_042729_020 0.1182236075 - - PREDICTED: protein argonaute 16 isoform X1 [Jatropha curcas]
13 Hb_005000_170 0.1185888967 - - PREDICTED: WD-40 repeat-containing protein MSI4 [Jatropha curcas]
14 Hb_001205_120 0.1188828048 - - PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Populus euphratica]
15 Hb_002631_030 0.1190348857 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002028_150 0.1194950139 - - PREDICTED: hepatocyte growth factor-regulated tyrosine kinase substrate [Jatropha curcas]
17 Hb_001511_050 0.1216171695 - - PREDICTED: probable inactive serine/threonine-protein kinase bub1 isoform X1 [Jatropha curcas]
18 Hb_003994_290 0.1237500043 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic [Jatropha curcas]
19 Hb_002006_030 0.1238386017 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER [Jatropha curcas]
20 Hb_001981_030 0.1247040407 - - nuclear acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001348_170 Hb_001348_170 Hb_004837_270 Hb_004837_270 Hb_001348_170--Hb_004837_270 Hb_001629_080 Hb_001629_080 Hb_001348_170--Hb_001629_080 Hb_002686_170 Hb_002686_170 Hb_001348_170--Hb_002686_170 Hb_000621_070 Hb_000621_070 Hb_001348_170--Hb_000621_070 Hb_000035_500 Hb_000035_500 Hb_001348_170--Hb_000035_500 Hb_004070_020 Hb_004070_020 Hb_001348_170--Hb_004070_020 Hb_004837_270--Hb_002686_170 Hb_004837_270--Hb_001629_080 Hb_000110_310 Hb_000110_310 Hb_004837_270--Hb_000110_310 Hb_001799_030 Hb_001799_030 Hb_004837_270--Hb_001799_030 Hb_000731_160 Hb_000731_160 Hb_004837_270--Hb_000731_160 Hb_002600_090 Hb_002600_090 Hb_001629_080--Hb_002600_090 Hb_010368_010 Hb_010368_010 Hb_001629_080--Hb_010368_010 Hb_005588_080 Hb_005588_080 Hb_001629_080--Hb_005588_080 Hb_001629_080--Hb_002686_170 Hb_001981_030 Hb_001981_030 Hb_002686_170--Hb_001981_030 Hb_002197_020 Hb_002197_020 Hb_002686_170--Hb_002197_020 Hb_002686_170--Hb_010368_010 Hb_002876_230 Hb_002876_230 Hb_002686_170--Hb_002876_230 Hb_021576_100 Hb_021576_100 Hb_002686_170--Hb_021576_100 Hb_005000_170 Hb_005000_170 Hb_002686_170--Hb_005000_170 Hb_000621_070--Hb_004837_270 Hb_002631_030 Hb_002631_030 Hb_000621_070--Hb_002631_030 Hb_000621_070--Hb_001629_080 Hb_000174_210 Hb_000174_210 Hb_000621_070--Hb_000174_210 Hb_034482_020 Hb_034482_020 Hb_000621_070--Hb_034482_020 Hb_000245_220 Hb_000245_220 Hb_000035_500--Hb_000245_220 Hb_006570_140 Hb_006570_140 Hb_000035_500--Hb_006570_140 Hb_001922_170 Hb_001922_170 Hb_000035_500--Hb_001922_170 Hb_001268_240 Hb_001268_240 Hb_000035_500--Hb_001268_240 Hb_000035_500--Hb_000731_160 Hb_029879_010 Hb_029879_010 Hb_000035_500--Hb_029879_010 Hb_000039_220 Hb_000039_220 Hb_004070_020--Hb_000039_220 Hb_000468_060 Hb_000468_060 Hb_004070_020--Hb_000468_060 Hb_000768_090 Hb_000768_090 Hb_004070_020--Hb_000768_090 Hb_008511_120 Hb_008511_120 Hb_004070_020--Hb_008511_120 Hb_032808_010 Hb_032808_010 Hb_004070_020--Hb_032808_010 Hb_000417_130 Hb_000417_130 Hb_004070_020--Hb_000417_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.94263 3.8095 14.0404 4.91074 5.60487 6.18749
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.5807 6.98172 7.985 11.2255 7.23471

CAGE analysis