Hb_004837_270

Information

Type -
Description -
Location Contig4837: 224374-228837
Sequence    

Annotation

kegg
ID rcu:RCOM_1578400
description cinnamoyl-CoA reductase, putative (EC:1.1.1.219)
nr
ID XP_012090024.1
description PREDICTED: cinnamoyl-CoA reductase 1 [Jatropha curcas]
swissprot
ID Q9S9N9
description Cinnamoyl-CoA reductase 1 OS=Arabidopsis thaliana GN=CCR1 PE=1 SV=1
trembl
ID A0A067JH23
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25939 PE=4 SV=1
Gene Ontology
ID GO:0004022
description cinnamoyl- reductase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44898: 224382-228770
cDNA
(Sanger)
(ID:Location)		 044_J16.ab1: 225892-228770

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004837_270 0.0 - - PREDICTED: cinnamoyl-CoA reductase 1 [Jatropha curcas]
2 Hb_001348_170 0.0709097857 - - PREDICTED: filament-like plant protein isoform X2 [Jatropha curcas]
3 Hb_002686_170 0.0853391003 - - PREDICTED: uncharacterized protein LOC105632645 isoform X1 [Jatropha curcas]
4 Hb_001629_080 0.0895654925 - - hypothetical protein POPTR_0011s12610g [Populus trichocarpa]
5 Hb_000110_310 0.0923412044 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]
6 Hb_001799_030 0.0938190671 - - PREDICTED: ELMO domain-containing protein C-like [Jatropha curcas]
7 Hb_000731_160 0.0940465554 - - PREDICTED: adenosine deaminase-like protein [Jatropha curcas]
8 Hb_000621_070 0.0955251437 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
9 Hb_000049_140 0.0962426504 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Jatropha curcas]
10 Hb_107879_010 0.0984739768 - - phosphoglycerate mutase, putative [Ricinus communis]
11 Hb_002304_150 0.0989487401 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
12 Hb_000270_680 0.0992326733 - - hypothetical protein POPTR_0015s08420g [Populus trichocarpa]
13 Hb_004070_020 0.100583751 - - rhythmically-expressed protein 2 protein, putative [Ricinus communis]
14 Hb_000245_220 0.1015582321 - - PREDICTED: uncharacterized protein LOC105635566 [Jatropha curcas]
15 Hb_001472_100 0.1034012556 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
16 Hb_000260_630 0.1034542705 - - PREDICTED: altered inheritance rate of mitochondria protein 25 isoform X1 [Jatropha curcas]
17 Hb_032808_010 0.1035834078 - - PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Jatropha curcas]
18 Hb_009545_080 0.1037312862 - - hypothetical protein POPTR_0008s15400g [Populus trichocarpa]
19 Hb_032986_010 0.1046123583 - - Nicotinate-nucleotide pyrophosphorylase [carboxylating], putative [Ricinus communis]
20 Hb_000212_330 0.1046620758 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004837_270 Hb_004837_270 Hb_001348_170 Hb_001348_170 Hb_004837_270--Hb_001348_170 Hb_002686_170 Hb_002686_170 Hb_004837_270--Hb_002686_170 Hb_001629_080 Hb_001629_080 Hb_004837_270--Hb_001629_080 Hb_000110_310 Hb_000110_310 Hb_004837_270--Hb_000110_310 Hb_001799_030 Hb_001799_030 Hb_004837_270--Hb_001799_030 Hb_000731_160 Hb_000731_160 Hb_004837_270--Hb_000731_160 Hb_001348_170--Hb_001629_080 Hb_001348_170--Hb_002686_170 Hb_000621_070 Hb_000621_070 Hb_001348_170--Hb_000621_070 Hb_000035_500 Hb_000035_500 Hb_001348_170--Hb_000035_500 Hb_004070_020 Hb_004070_020 Hb_001348_170--Hb_004070_020 Hb_001981_030 Hb_001981_030 Hb_002686_170--Hb_001981_030 Hb_002197_020 Hb_002197_020 Hb_002686_170--Hb_002197_020 Hb_010368_010 Hb_010368_010 Hb_002686_170--Hb_010368_010 Hb_002876_230 Hb_002876_230 Hb_002686_170--Hb_002876_230 Hb_021576_100 Hb_021576_100 Hb_002686_170--Hb_021576_100 Hb_005000_170 Hb_005000_170 Hb_002686_170--Hb_005000_170 Hb_002600_090 Hb_002600_090 Hb_001629_080--Hb_002600_090 Hb_001629_080--Hb_010368_010 Hb_005588_080 Hb_005588_080 Hb_001629_080--Hb_005588_080 Hb_001629_080--Hb_002686_170 Hb_006153_070 Hb_006153_070 Hb_000110_310--Hb_006153_070 Hb_009898_050 Hb_009898_050 Hb_000110_310--Hb_009898_050 Hb_000579_120 Hb_000579_120 Hb_000110_310--Hb_000579_120 Hb_000270_680 Hb_000270_680 Hb_000110_310--Hb_000270_680 Hb_001472_100 Hb_001472_100 Hb_000110_310--Hb_001472_100 Hb_001268_240 Hb_001268_240 Hb_000110_310--Hb_001268_240 Hb_002304_150 Hb_002304_150 Hb_001799_030--Hb_002304_150 Hb_000720_040 Hb_000720_040 Hb_001799_030--Hb_000720_040 Hb_012258_010 Hb_012258_010 Hb_001799_030--Hb_012258_010 Hb_000300_500 Hb_000300_500 Hb_001799_030--Hb_000300_500 Hb_001799_030--Hb_000110_310 Hb_002681_100 Hb_002681_100 Hb_001799_030--Hb_002681_100 Hb_000012_250 Hb_000012_250 Hb_000731_160--Hb_000012_250 Hb_002477_300 Hb_002477_300 Hb_000731_160--Hb_002477_300 Hb_146673_010 Hb_146673_010 Hb_000731_160--Hb_146673_010 Hb_000731_160--Hb_001472_100 Hb_006570_140 Hb_006570_140 Hb_000731_160--Hb_006570_140 Hb_000185_050 Hb_000185_050 Hb_000731_160--Hb_000185_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
63.8308 24.8209 111.85 55.8651 58.5712 52.3863
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
95.3618 59.8906 61.1897 66.4095 52.4699

CAGE analysis