Hb_000012_250

Information

Type -
Description -
Location Contig12: 332428-335012
Sequence    

Annotation

kegg
ID cic:CICLE_v10009918mg
description hypothetical protein
nr
ID XP_010097085.1
description hypothetical protein L484_019524 [Morus notabilis]
swissprot
ID -
description -
trembl
ID W9R3P6
description Uncharacterized protein OS=Morus notabilis GN=L484_019524 PE=4 SV=1
Gene Ontology
ID GO:0000276
description hydrogen-transporting atp rotational

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06005: 332430-334960 , PASA_asmbl_06006: 333414-334802 , PASA_asmbl_06007: 332867-333220
cDNA
(Sanger)
(ID:Location)		 025_M12.ab1: 332498-334957

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000012_250 0.0 - - hypothetical protein L484_019524 [Morus notabilis]
2 Hb_002759_190 0.0742709574 - - PREDICTED: protein NLRC3 [Jatropha curcas]
3 Hb_000731_160 0.0763711962 - - PREDICTED: adenosine deaminase-like protein [Jatropha curcas]
4 Hb_001863_380 0.0851989069 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]
5 Hb_107879_010 0.085712255 - - phosphoglycerate mutase, putative [Ricinus communis]
6 Hb_000163_100 0.0903683998 - - PREDICTED: uncharacterized protein LOC105642537 [Jatropha curcas]
7 Hb_001472_100 0.0909116836 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
8 Hb_146673_010 0.0917682534 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
9 Hb_000185_050 0.0938159061 - - PREDICTED: FKBP12-interacting protein of 37 kDa [Jatropha curcas]
10 Hb_000413_240 0.0955660951 - - PREDICTED: transcription factor ILR3-like isoform X2 [Jatropha curcas]
11 Hb_002946_190 0.0972506049 - - PREDICTED: nudix hydrolase 26, chloroplastic [Jatropha curcas]
12 Hb_001105_170 0.0987259567 - - PREDICTED: uncharacterized protein LOC105642727 isoform X1 [Jatropha curcas]
13 Hb_001318_260 0.1008244317 - - PREDICTED: nitrogen regulatory protein P-II homolog [Jatropha curcas]
14 Hb_000227_170 0.1022910045 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
15 Hb_000413_060 0.1024514782 - - PREDICTED: DAG protein, chloroplastic [Populus euphratica]
16 Hb_004041_020 0.1027494613 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
17 Hb_003942_020 0.107041576 - - PREDICTED: multiple RNA-binding domain-containing protein 1 isoform X1 [Jatropha curcas]
18 Hb_005494_010 0.1075054377 - - catalytic, putative [Ricinus communis]
19 Hb_001322_110 0.1077031817 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001946_140 0.1080241949 - - PREDICTED: heme oxygenase 1, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_000012_250 Hb_000012_250 Hb_002759_190 Hb_002759_190 Hb_000012_250--Hb_002759_190 Hb_000731_160 Hb_000731_160 Hb_000012_250--Hb_000731_160 Hb_001863_380 Hb_001863_380 Hb_000012_250--Hb_001863_380 Hb_107879_010 Hb_107879_010 Hb_000012_250--Hb_107879_010 Hb_000163_100 Hb_000163_100 Hb_000012_250--Hb_000163_100 Hb_001472_100 Hb_001472_100 Hb_000012_250--Hb_001472_100 Hb_003747_230 Hb_003747_230 Hb_002759_190--Hb_003747_230 Hb_002759_190--Hb_001863_380 Hb_005494_010 Hb_005494_010 Hb_002759_190--Hb_005494_010 Hb_000227_170 Hb_000227_170 Hb_002759_190--Hb_000227_170 Hb_001900_140 Hb_001900_140 Hb_002759_190--Hb_001900_140 Hb_002477_300 Hb_002477_300 Hb_000731_160--Hb_002477_300 Hb_146673_010 Hb_146673_010 Hb_000731_160--Hb_146673_010 Hb_000731_160--Hb_001472_100 Hb_006570_140 Hb_006570_140 Hb_000731_160--Hb_006570_140 Hb_000185_050 Hb_000185_050 Hb_000731_160--Hb_000185_050 Hb_000413_240 Hb_000413_240 Hb_001863_380--Hb_000413_240 Hb_002946_190 Hb_002946_190 Hb_001863_380--Hb_002946_190 Hb_002343_040 Hb_002343_040 Hb_001863_380--Hb_002343_040 Hb_012565_070 Hb_012565_070 Hb_001863_380--Hb_012565_070 Hb_000373_050 Hb_000373_050 Hb_001863_380--Hb_000373_050 Hb_107879_010--Hb_000227_170 Hb_000270_680 Hb_000270_680 Hb_107879_010--Hb_000270_680 Hb_107879_010--Hb_001472_100 Hb_000579_120 Hb_000579_120 Hb_107879_010--Hb_000579_120 Hb_000110_310 Hb_000110_310 Hb_107879_010--Hb_000110_310 Hb_003513_010 Hb_003513_010 Hb_107879_010--Hb_003513_010 Hb_000163_100--Hb_000413_240 Hb_000413_060 Hb_000413_060 Hb_000163_100--Hb_000413_060 Hb_000163_100--Hb_001863_380 Hb_000163_100--Hb_002946_190 Hb_000429_040 Hb_000429_040 Hb_000163_100--Hb_000429_040 Hb_000976_120 Hb_000976_120 Hb_001472_100--Hb_000976_120 Hb_002553_060 Hb_002553_060 Hb_001472_100--Hb_002553_060 Hb_001472_100--Hb_000110_310 Hb_001472_100--Hb_000270_680 Hb_003207_180 Hb_003207_180 Hb_001472_100--Hb_003207_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.0115 14.2844 80.2948 30.0646 27.132 25.919
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
50.5533 70.2989 29.2174 37.8323 50.2392

CAGE analysis