Hb_002343_040

Information

Type -
Description -
Location Contig2343: 56704-60040
Sequence    

Annotation

kegg
ID rcu:RCOM_1681190
description ATP-dependent Clp protease proteolytic subunit, putative (EC:3.4.21.92)
nr
ID XP_012087079.1
description PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q9XJ36
description ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic OS=Arabidopsis thaliana GN=CLPR2 PE=1 SV=1
trembl
ID A0A067JRW2
description ATP-dependent Clp protease proteolytic subunit OS=Jatropha curcas GN=JCGZ_20739 PE=3 SV=1
Gene Ontology
ID GO:0009534
description atp-dependent clp protease proteolytic subunit-related protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24578: 56689-59999
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002343_040 0.0 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_001863_380 0.0702245015 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]
3 Hb_012340_090 0.0704000379 - - PREDICTED: endonuclease III homolog 1, chloroplastic isoform X1 [Populus euphratica]
4 Hb_001105_170 0.0735048328 - - PREDICTED: uncharacterized protein LOC105642727 isoform X1 [Jatropha curcas]
5 Hb_146255_020 0.0790357113 - - PREDICTED: chromatin structure-remodeling complex protein BSH [Jatropha curcas]
6 Hb_004807_020 0.0797679689 - - PREDICTED: transcription initiation factor TFIID subunit 14b-like [Jatropha curcas]
7 Hb_001025_090 0.0857418908 - - PREDICTED: FKBP12-interacting protein of 37 kDa [Jatropha curcas]
8 Hb_000789_320 0.0892008472 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
9 Hb_002163_050 0.089588567 - - hypothetical protein POPTR_0014s15490g [Populus trichocarpa]
10 Hb_000270_470 0.0935616816 transcription factor TF Family: E2F-DP PREDICTED: pentatricopeptide repeat-containing protein At1g74900, mitochondrial [Jatropha curcas]
11 Hb_000757_030 0.0948618614 - - radical sam protein, putative [Ricinus communis]
12 Hb_002946_190 0.096766798 - - PREDICTED: nudix hydrolase 26, chloroplastic [Jatropha curcas]
13 Hb_001517_050 0.0989324882 transcription factor TF Family: BBR-BPC conserved hypothetical protein [Ricinus communis]
14 Hb_000373_050 0.0999021137 - - PREDICTED: protein WHI3 [Jatropha curcas]
15 Hb_006615_050 0.100058899 - - PREDICTED: uncharacterized protein LOC105640686 [Jatropha curcas]
16 Hb_000107_030 0.100370765 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000413_060 0.10100535 - - PREDICTED: DAG protein, chloroplastic [Populus euphratica]
18 Hb_000035_250 0.1012705361 - - PREDICTED: uncharacterized protein LOC105637544 [Jatropha curcas]
19 Hb_000300_260 0.1034753455 - - PREDICTED: replication factor C subunit 3 [Jatropha curcas]
20 Hb_001671_040 0.103658291 - - PREDICTED: serine/arginine-rich splicing factor RS31-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_002343_040 Hb_002343_040 Hb_001863_380 Hb_001863_380 Hb_002343_040--Hb_001863_380 Hb_012340_090 Hb_012340_090 Hb_002343_040--Hb_012340_090 Hb_001105_170 Hb_001105_170 Hb_002343_040--Hb_001105_170 Hb_146255_020 Hb_146255_020 Hb_002343_040--Hb_146255_020 Hb_004807_020 Hb_004807_020 Hb_002343_040--Hb_004807_020 Hb_001025_090 Hb_001025_090 Hb_002343_040--Hb_001025_090 Hb_000413_240 Hb_000413_240 Hb_001863_380--Hb_000413_240 Hb_002946_190 Hb_002946_190 Hb_001863_380--Hb_002946_190 Hb_012565_070 Hb_012565_070 Hb_001863_380--Hb_012565_070 Hb_000373_050 Hb_000373_050 Hb_001863_380--Hb_000373_050 Hb_002759_190 Hb_002759_190 Hb_001863_380--Hb_002759_190 Hb_012340_090--Hb_001105_170 Hb_000035_250 Hb_000035_250 Hb_012340_090--Hb_000035_250 Hb_012340_090--Hb_001025_090 Hb_003848_040 Hb_003848_040 Hb_012340_090--Hb_003848_040 Hb_002284_150 Hb_002284_150 Hb_012340_090--Hb_002284_150 Hb_001105_170--Hb_003848_040 Hb_001105_170--Hb_001863_380 Hb_001105_170--Hb_012565_070 Hb_000300_260 Hb_000300_260 Hb_001105_170--Hb_000300_260 Hb_006061_040 Hb_006061_040 Hb_146255_020--Hb_006061_040 Hb_146255_020--Hb_004807_020 Hb_146255_020--Hb_001025_090 Hb_146255_020--Hb_001105_170 Hb_001804_090 Hb_001804_090 Hb_146255_020--Hb_001804_090 Hb_004807_020--Hb_001025_090 Hb_006615_050 Hb_006615_050 Hb_004807_020--Hb_006615_050 Hb_001025_120 Hb_001025_120 Hb_004807_020--Hb_001025_120 Hb_171900_090 Hb_171900_090 Hb_004807_020--Hb_171900_090 Hb_018790_020 Hb_018790_020 Hb_004807_020--Hb_018790_020 Hb_000270_470 Hb_000270_470 Hb_001025_090--Hb_000270_470 Hb_001025_090--Hb_171900_090 Hb_000176_020 Hb_000176_020 Hb_001025_090--Hb_000176_020 Hb_000789_320 Hb_000789_320 Hb_001025_090--Hb_000789_320 Hb_000875_080 Hb_000875_080 Hb_001025_090--Hb_000875_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.6123 30.1232 94.9613 26.0987 32.2459 29.6076
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.2517 58.7376 29.9604 30.9538 34.2908

CAGE analysis