Hb_002284_150

Information

Type -
Description -
Location Contig2284: 120372-123807
Sequence    

Annotation

kegg
ID rcu:RCOM_1601730
description hypothetical protein
nr
ID XP_012073609.1
description PREDICTED: uncharacterized protein LOC105635198 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KY66
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08055 PE=4 SV=1
Gene Ontology
ID GO:0005739
description localized to the inner membrane of the chloroplast

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23805: 120460-123794 , PASA_asmbl_23806: 120493-120923
cDNA
(Sanger)
(ID:Location)		 006_P12.ab1: 120460-123479 , 011_N16.ab1: 120493-123587 , 019_K05.ab1: 120493-123516 , 021_F19.ab1: 120597-123668 , 026_A22.ab1: 120597-123693 , 028_F18.ab1: 120493-123420 , 039_D01.ab1: 120597-123709 , 042_N07.ab1: 120597-123670

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002284_150 0.0 - - PREDICTED: uncharacterized protein LOC105635198 [Jatropha curcas]
2 Hb_001517_050 0.0794311466 transcription factor TF Family: BBR-BPC conserved hypothetical protein [Ricinus communis]
3 Hb_012340_090 0.0864613845 - - PREDICTED: endonuclease III homolog 1, chloroplastic isoform X1 [Populus euphratica]
4 Hb_003213_010 0.0979935059 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
5 Hb_000300_260 0.1016399674 - - PREDICTED: replication factor C subunit 3 [Jatropha curcas]
6 Hb_000649_230 0.1018827631 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
7 Hb_002946_190 0.1074093818 - - PREDICTED: nudix hydrolase 26, chloroplastic [Jatropha curcas]
8 Hb_000035_250 0.1079798159 - - PREDICTED: uncharacterized protein LOC105637544 [Jatropha curcas]
9 Hb_006132_110 0.1086559455 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002343_040 0.1089807709 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_000181_090 0.1093487079 - - PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
12 Hb_001953_070 0.1101206118 - - PREDICTED: RNA pseudouridine synthase 7 isoform X2 [Jatropha curcas]
13 Hb_004312_010 0.1112483867 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X2 [Jatropha curcas]
14 Hb_000046_040 0.1121290586 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003848_040 0.112249186 - - PREDICTED: phosphatidylinositol-glycan biosynthesis class X protein isoform X1 [Jatropha curcas]
16 Hb_001328_030 0.1132397828 - - PREDICTED: nucleobase-ascorbate transporter 1 [Jatropha curcas]
17 Hb_065755_030 0.114034594 - - -
18 Hb_000260_800 0.114153948 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Populus euphratica]
19 Hb_000000_210 0.1143254756 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like isoform X1 [Jatropha curcas]
20 Hb_001277_280 0.1144578312 - - PREDICTED: protein argonaute 10 [Jatropha curcas]

Gene co-expression network

sample Hb_002284_150 Hb_002284_150 Hb_001517_050 Hb_001517_050 Hb_002284_150--Hb_001517_050 Hb_012340_090 Hb_012340_090 Hb_002284_150--Hb_012340_090 Hb_003213_010 Hb_003213_010 Hb_002284_150--Hb_003213_010 Hb_000300_260 Hb_000300_260 Hb_002284_150--Hb_000300_260 Hb_000649_230 Hb_000649_230 Hb_002284_150--Hb_000649_230 Hb_002946_190 Hb_002946_190 Hb_002284_150--Hb_002946_190 Hb_001517_050--Hb_000300_260 Hb_000789_320 Hb_000789_320 Hb_001517_050--Hb_000789_320 Hb_006816_100 Hb_006816_100 Hb_001517_050--Hb_006816_100 Hb_001517_050--Hb_012340_090 Hb_001517_050--Hb_003213_010 Hb_001105_170 Hb_001105_170 Hb_012340_090--Hb_001105_170 Hb_002343_040 Hb_002343_040 Hb_012340_090--Hb_002343_040 Hb_000035_250 Hb_000035_250 Hb_012340_090--Hb_000035_250 Hb_001025_090 Hb_001025_090 Hb_012340_090--Hb_001025_090 Hb_003848_040 Hb_003848_040 Hb_012340_090--Hb_003848_040 Hb_000173_310 Hb_000173_310 Hb_003213_010--Hb_000173_310 Hb_001723_150 Hb_001723_150 Hb_003213_010--Hb_001723_150 Hb_003213_010--Hb_000300_260 Hb_003213_010--Hb_000649_230 Hb_004312_010 Hb_004312_010 Hb_003213_010--Hb_004312_010 Hb_002272_050 Hb_002272_050 Hb_003213_010--Hb_002272_050 Hb_000300_260--Hb_004312_010 Hb_000300_260--Hb_000173_310 Hb_012565_070 Hb_012565_070 Hb_000300_260--Hb_012565_070 Hb_000300_260--Hb_001723_150 Hb_000086_170 Hb_000086_170 Hb_000300_260--Hb_000086_170 Hb_000392_230 Hb_000392_230 Hb_000649_230--Hb_000392_230 Hb_010315_060 Hb_010315_060 Hb_000649_230--Hb_010315_060 Hb_027428_010 Hb_027428_010 Hb_000649_230--Hb_027428_010 Hb_073973_130 Hb_073973_130 Hb_000649_230--Hb_073973_130 Hb_022132_050 Hb_022132_050 Hb_000649_230--Hb_022132_050 Hb_004041_020 Hb_004041_020 Hb_002946_190--Hb_004041_020 Hb_000690_190 Hb_000690_190 Hb_002946_190--Hb_000690_190 Hb_001863_380 Hb_001863_380 Hb_002946_190--Hb_001863_380 Hb_146673_010 Hb_146673_010 Hb_002946_190--Hb_146673_010 Hb_000413_240 Hb_000413_240 Hb_002946_190--Hb_000413_240 Hb_001472_100 Hb_001472_100 Hb_002946_190--Hb_001472_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
187.655 108.662 355.403 135.952 103.909 110.608
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
187.09 173.526 114.145 63.8442 103.101

CAGE analysis