Hb_012340_090

Information

Type -
Description -
Location Contig12340: 63225-72430
Sequence    

Annotation

kegg
ID rcu:RCOM_0143730
description endonuclease III, putative (EC:4.2.99.18)
nr
ID XP_011026395.1
description PREDICTED: endonuclease III homolog 1, chloroplastic isoform X1 [Populus euphratica]
swissprot
ID Q9SIC4
description Endonuclease III homolog 1, chloroplastic OS=Arabidopsis thaliana GN=NTH1 PE=2 SV=2
trembl
ID B9T798
description Endonuclease III homolog OS=Ricinus communis GN=NTH1 PE=3 SV=1
Gene Ontology
ID GO:0005634
description endonuclease iii homolog chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07136: 63299-64019 , PASA_asmbl_07137: 66929-72416 , PASA_asmbl_07138: 69727-72416
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012340_090 0.0 - - PREDICTED: endonuclease III homolog 1, chloroplastic isoform X1 [Populus euphratica]
2 Hb_001105_170 0.0663632736 - - PREDICTED: uncharacterized protein LOC105642727 isoform X1 [Jatropha curcas]
3 Hb_002343_040 0.0704000379 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_000035_250 0.0735485819 - - PREDICTED: uncharacterized protein LOC105637544 [Jatropha curcas]
5 Hb_001025_090 0.07687475 - - PREDICTED: FKBP12-interacting protein of 37 kDa [Jatropha curcas]
6 Hb_003848_040 0.0786621562 - - PREDICTED: phosphatidylinositol-glycan biosynthesis class X protein isoform X1 [Jatropha curcas]
7 Hb_002284_150 0.0864613845 - - PREDICTED: uncharacterized protein LOC105635198 [Jatropha curcas]
8 Hb_001396_210 0.0872743931 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000270_470 0.0874740434 transcription factor TF Family: E2F-DP PREDICTED: pentatricopeptide repeat-containing protein At1g74900, mitochondrial [Jatropha curcas]
10 Hb_000789_320 0.0876604017 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
11 Hb_001517_050 0.0886548397 transcription factor TF Family: BBR-BPC conserved hypothetical protein [Ricinus communis]
12 Hb_000300_260 0.0907704503 - - PREDICTED: replication factor C subunit 3 [Jatropha curcas]
13 Hb_001953_070 0.097201676 - - PREDICTED: RNA pseudouridine synthase 7 isoform X2 [Jatropha curcas]
14 Hb_001671_040 0.0974580131 - - PREDICTED: serine/arginine-rich splicing factor RS31-like isoform X1 [Populus euphratica]
15 Hb_002946_190 0.0977312468 - - PREDICTED: nudix hydrolase 26, chloroplastic [Jatropha curcas]
16 Hb_004807_020 0.0978767474 - - PREDICTED: transcription initiation factor TFIID subunit 14b-like [Jatropha curcas]
17 Hb_001699_210 0.0984305637 - - PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 isoform X1 [Jatropha curcas]
18 Hb_001863_380 0.0985405484 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]
19 Hb_146255_020 0.1006689614 - - PREDICTED: chromatin structure-remodeling complex protein BSH [Jatropha curcas]
20 Hb_000345_510 0.1012940469 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_012340_090 Hb_012340_090 Hb_001105_170 Hb_001105_170 Hb_012340_090--Hb_001105_170 Hb_002343_040 Hb_002343_040 Hb_012340_090--Hb_002343_040 Hb_000035_250 Hb_000035_250 Hb_012340_090--Hb_000035_250 Hb_001025_090 Hb_001025_090 Hb_012340_090--Hb_001025_090 Hb_003848_040 Hb_003848_040 Hb_012340_090--Hb_003848_040 Hb_002284_150 Hb_002284_150 Hb_012340_090--Hb_002284_150 Hb_001105_170--Hb_003848_040 Hb_001105_170--Hb_002343_040 Hb_001863_380 Hb_001863_380 Hb_001105_170--Hb_001863_380 Hb_012565_070 Hb_012565_070 Hb_001105_170--Hb_012565_070 Hb_000300_260 Hb_000300_260 Hb_001105_170--Hb_000300_260 Hb_002343_040--Hb_001863_380 Hb_146255_020 Hb_146255_020 Hb_002343_040--Hb_146255_020 Hb_004807_020 Hb_004807_020 Hb_002343_040--Hb_004807_020 Hb_002343_040--Hb_001025_090 Hb_001671_040 Hb_001671_040 Hb_000035_250--Hb_001671_040 Hb_001953_070 Hb_001953_070 Hb_000035_250--Hb_001953_070 Hb_004128_200 Hb_004128_200 Hb_000035_250--Hb_004128_200 Hb_000035_250--Hb_002343_040 Hb_000035_250--Hb_002284_150 Hb_001025_090--Hb_004807_020 Hb_000270_470 Hb_000270_470 Hb_001025_090--Hb_000270_470 Hb_171900_090 Hb_171900_090 Hb_001025_090--Hb_171900_090 Hb_000176_020 Hb_000176_020 Hb_001025_090--Hb_000176_020 Hb_000789_320 Hb_000789_320 Hb_001025_090--Hb_000789_320 Hb_000875_080 Hb_000875_080 Hb_001025_090--Hb_000875_080 Hb_003848_040--Hb_012565_070 Hb_003207_180 Hb_003207_180 Hb_003848_040--Hb_003207_180 Hb_003848_040--Hb_000300_260 Hb_001472_100 Hb_001472_100 Hb_003848_040--Hb_001472_100 Hb_001517_050 Hb_001517_050 Hb_002284_150--Hb_001517_050 Hb_003213_010 Hb_003213_010 Hb_002284_150--Hb_003213_010 Hb_002284_150--Hb_000300_260 Hb_000649_230 Hb_000649_230 Hb_002284_150--Hb_000649_230 Hb_002946_190 Hb_002946_190 Hb_002284_150--Hb_002946_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.20572 6.56074 21.5413 7.92836 7.61581 6.13987
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7676 12.3373 4.44121 6.82184 7.83002

CAGE analysis