Hb_001671_040

Information

Type -
Description -
Location Contig1671: 48480-51635
Sequence    

Annotation

kegg
ID pop:POPTR_0002s17560g
description POPTRDRAFT_552308; arginine/serine-rich splicing factor RSP31 family protein
nr
ID XP_011023136.1
description PREDICTED: serine/arginine-rich splicing factor RS31-like isoform X1 [Populus euphratica]
swissprot
ID P92964
description Serine/arginine-rich splicing factor RS31 OS=Arabidopsis thaliana GN=RS31 PE=1 SV=2
trembl
ID B9GR47
description Arginine/serine-rich splicing factor RSP31 family protein OS=Populus trichocarpa GN=POPTR_0002s17560g PE=4 SV=2
Gene Ontology
ID GO:0005681
description serine arginine-rich splicing factor rs31 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15424: 49118-49529 , PASA_asmbl_15425: 48511-51698 , PASA_asmbl_15426: 48667-49935
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001671_040 0.0 - - PREDICTED: serine/arginine-rich splicing factor RS31-like isoform X1 [Populus euphratica]
2 Hb_000035_250 0.0655089877 - - PREDICTED: uncharacterized protein LOC105637544 [Jatropha curcas]
3 Hb_001953_070 0.0829006703 - - PREDICTED: RNA pseudouridine synthase 7 isoform X2 [Jatropha curcas]
4 Hb_006615_050 0.0865194416 - - PREDICTED: uncharacterized protein LOC105640686 [Jatropha curcas]
5 Hb_004648_090 0.0894215572 - - peroxisomal biogenesis factor, putative [Ricinus communis]
6 Hb_008225_090 0.0899743643 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Jatropha curcas]
7 Hb_000010_110 0.0962272492 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Jatropha curcas]
8 Hb_000270_470 0.0973733748 transcription factor TF Family: E2F-DP PREDICTED: pentatricopeptide repeat-containing protein At1g74900, mitochondrial [Jatropha curcas]
9 Hb_012340_090 0.0974580131 - - PREDICTED: endonuclease III homolog 1, chloroplastic isoform X1 [Populus euphratica]
10 Hb_005389_100 0.0978192657 - - PREDICTED: methyltransferase-like protein 5 isoform X2 [Jatropha curcas]
11 Hb_000789_320 0.0980607491 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
12 Hb_002228_110 0.1006743743 - - cytochrome b5 isoform Cb5-B [Vernicia fordii]
13 Hb_001025_090 0.1008550434 - - PREDICTED: FKBP12-interacting protein of 37 kDa [Jatropha curcas]
14 Hb_009659_050 0.1025522864 - - PREDICTED: putative hydrolase C777.06c isoform X2 [Jatropha curcas]
15 Hb_002343_040 0.103658291 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_000176_020 0.1037712458 - - PREDICTED: nuclear pore complex protein NUP43 [Jatropha curcas]
17 Hb_007254_020 0.104313334 - - PREDICTED: uncharacterized protein LOC105629137 [Jatropha curcas]
18 Hb_004128_200 0.1043881292 - - PREDICTED: uncharacterized protein LOC105642137 [Jatropha curcas]
19 Hb_002092_120 0.1061994815 - - PREDICTED: peptidyl-tRNA hydrolase, chloroplastic [Jatropha curcas]
20 Hb_004870_050 0.1067620875 - - PREDICTED: ATP-dependent RNA helicase DBP3 [Jatropha curcas]

Gene co-expression network

sample Hb_001671_040 Hb_001671_040 Hb_000035_250 Hb_000035_250 Hb_001671_040--Hb_000035_250 Hb_001953_070 Hb_001953_070 Hb_001671_040--Hb_001953_070 Hb_006615_050 Hb_006615_050 Hb_001671_040--Hb_006615_050 Hb_004648_090 Hb_004648_090 Hb_001671_040--Hb_004648_090 Hb_008225_090 Hb_008225_090 Hb_001671_040--Hb_008225_090 Hb_000010_110 Hb_000010_110 Hb_001671_040--Hb_000010_110 Hb_012340_090 Hb_012340_090 Hb_000035_250--Hb_012340_090 Hb_000035_250--Hb_001953_070 Hb_004128_200 Hb_004128_200 Hb_000035_250--Hb_004128_200 Hb_002343_040 Hb_002343_040 Hb_000035_250--Hb_002343_040 Hb_002284_150 Hb_002284_150 Hb_000035_250--Hb_002284_150 Hb_002542_040 Hb_002542_040 Hb_001953_070--Hb_002542_040 Hb_001953_070--Hb_000010_110 Hb_000144_070 Hb_000144_070 Hb_001953_070--Hb_000144_070 Hb_003213_010 Hb_003213_010 Hb_001953_070--Hb_003213_010 Hb_002820_030 Hb_002820_030 Hb_001953_070--Hb_002820_030 Hb_004807_020 Hb_004807_020 Hb_006615_050--Hb_004807_020 Hb_001077_070 Hb_001077_070 Hb_006615_050--Hb_001077_070 Hb_004312_010 Hb_004312_010 Hb_006615_050--Hb_004312_010 Hb_171900_090 Hb_171900_090 Hb_006615_050--Hb_171900_090 Hb_007007_040 Hb_007007_040 Hb_006615_050--Hb_007007_040 Hb_000789_320 Hb_000789_320 Hb_006615_050--Hb_000789_320 Hb_004870_050 Hb_004870_050 Hb_004648_090--Hb_004870_050 Hb_002110_160 Hb_002110_160 Hb_004648_090--Hb_002110_160 Hb_002228_110 Hb_002228_110 Hb_004648_090--Hb_002228_110 Hb_005389_100 Hb_005389_100 Hb_004648_090--Hb_005389_100 Hb_010998_040 Hb_010998_040 Hb_004648_090--Hb_010998_040 Hb_002092_120 Hb_002092_120 Hb_008225_090--Hb_002092_120 Hb_000270_470 Hb_000270_470 Hb_008225_090--Hb_000270_470 Hb_000270_310 Hb_000270_310 Hb_008225_090--Hb_000270_310 Hb_008225_090--Hb_000010_110 Hb_000176_020 Hb_000176_020 Hb_008225_090--Hb_000176_020 Hb_001025_090 Hb_001025_090 Hb_008225_090--Hb_001025_090 Hb_002553_040 Hb_002553_040 Hb_000010_110--Hb_002553_040 Hb_003001_080 Hb_003001_080 Hb_000010_110--Hb_003001_080 Hb_000522_150 Hb_000522_150 Hb_000010_110--Hb_000522_150 Hb_005271_220 Hb_005271_220 Hb_000010_110--Hb_005271_220 Hb_002217_110 Hb_002217_110 Hb_000010_110--Hb_002217_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.5388 14.7243 23.592 8.29594 8.94539 8.35436
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.60781 17.3093 4.70099 7.48365 8.12392

CAGE analysis