Hb_002092_120

Information

Type -
Description -
Location Contig2092: 147273-152567
Sequence    

Annotation

kegg
ID rcu:RCOM_1617410
description peptidyl-tRNA hydrolase, putative (EC:3.1.1.29)
nr
ID XP_012092986.1
description PREDICTED: peptidyl-tRNA hydrolase, chloroplastic [Jatropha curcas]
swissprot
ID Q8GW64
description Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidopsis thaliana GN=At1g18440 PE=2 SV=2
trembl
ID A0A067JKT9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05868 PE=3 SV=1
Gene Ontology
ID GO:0004045
description peptidyl-trna chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21642: 150960-151454 , PASA_asmbl_21647: 147305-152486
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002092_120 0.0 - - PREDICTED: peptidyl-tRNA hydrolase, chloroplastic [Jatropha curcas]
2 Hb_008225_090 0.0708218177 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Jatropha curcas]
3 Hb_000300_260 0.0927069766 - - PREDICTED: replication factor C subunit 3 [Jatropha curcas]
4 Hb_000176_020 0.0961590322 - - PREDICTED: nuclear pore complex protein NUP43 [Jatropha curcas]
5 Hb_002893_040 0.0969100309 - - PREDICTED: carbon catabolite repressor protein 4 homolog 6 isoform X1 [Jatropha curcas]
6 Hb_002572_020 0.0971389692 transcription factor TF Family: SBP hypothetical protein POPTR_0005s28010g [Populus trichocarpa]
7 Hb_000270_470 0.0987091543 transcription factor TF Family: E2F-DP PREDICTED: pentatricopeptide repeat-containing protein At1g74900, mitochondrial [Jatropha curcas]
8 Hb_001396_210 0.0988494641 - - conserved hypothetical protein [Ricinus communis]
9 Hb_010098_020 0.0995430879 - - PREDICTED: protein BOLA4, chloroplastic/mitochondrial [Jatropha curcas]
10 Hb_001025_090 0.100823509 - - PREDICTED: FKBP12-interacting protein of 37 kDa [Jatropha curcas]
11 Hb_032202_100 0.1037066753 desease resistance Gene Name: ArsA_ATPase arsenical pump-driving atpase, putative [Ricinus communis]
12 Hb_001776_210 0.1045749391 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
13 Hb_001178_010 0.1056418173 - - PREDICTED: uncharacterized protein LOC105629461 [Jatropha curcas]
14 Hb_001671_040 0.1061994815 - - PREDICTED: serine/arginine-rich splicing factor RS31-like isoform X1 [Populus euphratica]
15 Hb_171900_090 0.1071503265 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000173_310 0.1082603505 - - PREDICTED: uncharacterized protein LOC105631893 isoform X1 [Jatropha curcas]
17 Hb_003848_040 0.1094654006 - - PREDICTED: phosphatidylinositol-glycan biosynthesis class X protein isoform X1 [Jatropha curcas]
18 Hb_155215_020 0.1099870157 - - PREDICTED: RNA-binding protein pno1-like [Populus euphratica]
19 Hb_005245_120 0.110220395 - - XPA-binding protein, putative [Ricinus communis]
20 Hb_001623_270 0.1109689337 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002092_120 Hb_002092_120 Hb_008225_090 Hb_008225_090 Hb_002092_120--Hb_008225_090 Hb_000300_260 Hb_000300_260 Hb_002092_120--Hb_000300_260 Hb_000176_020 Hb_000176_020 Hb_002092_120--Hb_000176_020 Hb_002893_040 Hb_002893_040 Hb_002092_120--Hb_002893_040 Hb_002572_020 Hb_002572_020 Hb_002092_120--Hb_002572_020 Hb_000270_470 Hb_000270_470 Hb_002092_120--Hb_000270_470 Hb_008225_090--Hb_000270_470 Hb_000270_310 Hb_000270_310 Hb_008225_090--Hb_000270_310 Hb_000010_110 Hb_000010_110 Hb_008225_090--Hb_000010_110 Hb_008225_090--Hb_000176_020 Hb_001025_090 Hb_001025_090 Hb_008225_090--Hb_001025_090 Hb_004312_010 Hb_004312_010 Hb_000300_260--Hb_004312_010 Hb_000173_310 Hb_000173_310 Hb_000300_260--Hb_000173_310 Hb_012565_070 Hb_012565_070 Hb_000300_260--Hb_012565_070 Hb_003213_010 Hb_003213_010 Hb_000300_260--Hb_003213_010 Hb_001723_150 Hb_001723_150 Hb_000300_260--Hb_001723_150 Hb_000086_170 Hb_000086_170 Hb_000300_260--Hb_000086_170 Hb_171900_090 Hb_171900_090 Hb_000176_020--Hb_171900_090 Hb_001623_270 Hb_001623_270 Hb_000176_020--Hb_001623_270 Hb_000176_020--Hb_001025_090 Hb_000230_460 Hb_000230_460 Hb_000176_020--Hb_000230_460 Hb_000699_150 Hb_000699_150 Hb_000176_020--Hb_000699_150 Hb_000789_320 Hb_000789_320 Hb_000176_020--Hb_000789_320 Hb_001258_100 Hb_001258_100 Hb_002893_040--Hb_001258_100 Hb_002413_010 Hb_002413_010 Hb_002893_040--Hb_002413_010 Hb_001951_200 Hb_001951_200 Hb_002893_040--Hb_001951_200 Hb_001776_210 Hb_001776_210 Hb_002893_040--Hb_001776_210 Hb_002893_040--Hb_002572_020 Hb_000603_160 Hb_000603_160 Hb_002572_020--Hb_000603_160 Hb_002316_140 Hb_002316_140 Hb_002572_020--Hb_002316_140 Hb_002572_020--Hb_002413_010 Hb_000365_230 Hb_000365_230 Hb_002572_020--Hb_000365_230 Hb_002572_020--Hb_000173_310 Hb_183433_010 Hb_183433_010 Hb_002572_020--Hb_183433_010 Hb_000270_470--Hb_001025_090 Hb_000270_470--Hb_000789_320 Hb_111036_010 Hb_111036_010 Hb_000270_470--Hb_111036_010 Hb_000270_470--Hb_171900_090 Hb_000270_470--Hb_000176_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.5421 9.30411 15.9915 11.6621 4.32496 5.94872
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.60335 12.6777 2.65187 5.68987 7.24982

CAGE analysis