Hb_000010_110

Information

Type -
Description -
Location Contig10: 175096-178966
Sequence    

Annotation

kegg
ID rcu:RCOM_1508280
description afc, putative (EC:2.7.12.1)
nr
ID XP_012079958.1
description PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Jatropha curcas]
swissprot
ID P51567
description Serine/threonine-protein kinase AFC2 OS=Arabidopsis thaliana GN=AFC2 PE=1 SV=1
trembl
ID A0A067K460
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11387 PE=4 SV=1
Gene Ontology
ID GO:0004712
description serine threonine-protein kinase afc2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00140: 174947-179076 , PASA_asmbl_00141: 175071-177825 , PASA_asmbl_00142: 174947-179076 , PASA_asmbl_00143: 175778-177350
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000010_110 0.0 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Jatropha curcas]
2 Hb_002553_040 0.0721555538 - - PREDICTED: transcription factor bHLH104 [Jatropha curcas]
3 Hb_001953_070 0.0722281824 - - PREDICTED: RNA pseudouridine synthase 7 isoform X2 [Jatropha curcas]
4 Hb_003001_080 0.076970542 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
5 Hb_000522_150 0.0792006005 - - PREDICTED: uncharacterized protein LOC105646670 [Jatropha curcas]
6 Hb_005271_220 0.0799067241 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
7 Hb_002217_110 0.0817397657 - - PREDICTED: craniofacial development protein 1 [Jatropha curcas]
8 Hb_152175_010 0.0825047431 - - Protein grpE, putative [Ricinus communis]
9 Hb_008225_090 0.0838449414 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Jatropha curcas]
10 Hb_000340_400 0.0854913976 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
11 Hb_000053_110 0.0856087213 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005488_140 0.0862109302 - - 30S ribosomal protein S5, putative [Ricinus communis]
13 Hb_007423_040 0.0863159651 - - PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Jatropha curcas]
14 Hb_005116_060 0.0864237741 - - PREDICTED: mitochondrial Rho GTPase 2 isoform X1 [Jatropha curcas]
15 Hb_003213_010 0.0870157076 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
16 Hb_009659_050 0.0876408139 - - PREDICTED: putative hydrolase C777.06c isoform X2 [Jatropha curcas]
17 Hb_002820_030 0.0880513462 - - PREDICTED: uncharacterized protein LOC105638922 [Jatropha curcas]
18 Hb_000610_010 0.0890664651 - - PREDICTED: SKP1-like protein 1B [Musa acuminata subsp. malaccensis]
19 Hb_003142_030 0.089554653 - - PREDICTED: probable plastid-lipid-associated protein 14, chloroplastic [Jatropha curcas]
20 Hb_000729_030 0.0907580462 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]

Gene co-expression network

sample Hb_000010_110 Hb_000010_110 Hb_002553_040 Hb_002553_040 Hb_000010_110--Hb_002553_040 Hb_001953_070 Hb_001953_070 Hb_000010_110--Hb_001953_070 Hb_003001_080 Hb_003001_080 Hb_000010_110--Hb_003001_080 Hb_000522_150 Hb_000522_150 Hb_000010_110--Hb_000522_150 Hb_005271_220 Hb_005271_220 Hb_000010_110--Hb_005271_220 Hb_002217_110 Hb_002217_110 Hb_000010_110--Hb_002217_110 Hb_003020_270 Hb_003020_270 Hb_002553_040--Hb_003020_270 Hb_000886_050 Hb_000886_050 Hb_002553_040--Hb_000886_050 Hb_002553_040--Hb_000522_150 Hb_000487_210 Hb_000487_210 Hb_002553_040--Hb_000487_210 Hb_005116_060 Hb_005116_060 Hb_002553_040--Hb_005116_060 Hb_002542_040 Hb_002542_040 Hb_001953_070--Hb_002542_040 Hb_001671_040 Hb_001671_040 Hb_001953_070--Hb_001671_040 Hb_000144_070 Hb_000144_070 Hb_001953_070--Hb_000144_070 Hb_003213_010 Hb_003213_010 Hb_001953_070--Hb_003213_010 Hb_002820_030 Hb_002820_030 Hb_001953_070--Hb_002820_030 Hb_001163_050 Hb_001163_050 Hb_003001_080--Hb_001163_050 Hb_000340_400 Hb_000340_400 Hb_003001_080--Hb_000340_400 Hb_152175_010 Hb_152175_010 Hb_003001_080--Hb_152175_010 Hb_008453_140 Hb_008453_140 Hb_003001_080--Hb_008453_140 Hb_004837_180 Hb_004837_180 Hb_003001_080--Hb_004837_180 Hb_032202_140 Hb_032202_140 Hb_003001_080--Hb_032202_140 Hb_000738_020 Hb_000738_020 Hb_000522_150--Hb_000738_020 Hb_000869_080 Hb_000869_080 Hb_000522_150--Hb_000869_080 Hb_002205_110 Hb_002205_110 Hb_000522_150--Hb_002205_110 Hb_000522_150--Hb_005271_220 Hb_024958_010 Hb_024958_010 Hb_000522_150--Hb_024958_010 Hb_005730_120 Hb_005730_120 Hb_005271_220--Hb_005730_120 Hb_002232_410 Hb_002232_410 Hb_005271_220--Hb_002232_410 Hb_002303_070 Hb_002303_070 Hb_005271_220--Hb_002303_070 Hb_032808_010 Hb_032808_010 Hb_005271_220--Hb_032808_010 Hb_008511_120 Hb_008511_120 Hb_005271_220--Hb_008511_120 Hb_000403_050 Hb_000403_050 Hb_005271_220--Hb_000403_050 Hb_002217_110--Hb_004837_180 Hb_000260_680 Hb_000260_680 Hb_002217_110--Hb_000260_680 Hb_001456_060 Hb_001456_060 Hb_002217_110--Hb_001456_060 Hb_012384_030 Hb_012384_030 Hb_002217_110--Hb_012384_030 Hb_003929_280 Hb_003929_280 Hb_002217_110--Hb_003929_280 Hb_001776_060 Hb_001776_060 Hb_002217_110--Hb_001776_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.3346 29.8434 38.2448 21.7372 23.0299 19.8325
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.2336 39.3342 17.0728 18.1858 18.504

CAGE analysis