Hb_002542_040

Information

Type -
Description -
Location Contig2542: 68919-71280
Sequence    

Annotation

kegg
ID tcc:TCM_004584
description Uncharacterized protein isoform 1
nr
ID KDP28113.1
description hypothetical protein JCGZ_13884 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JZ79
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13884 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26570: 70869-71075
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002542_040 0.0 - - hypothetical protein JCGZ_13884 [Jatropha curcas]
2 Hb_001953_070 0.0707128269 - - PREDICTED: RNA pseudouridine synthase 7 isoform X2 [Jatropha curcas]
3 Hb_007533_010 0.0951125553 transcription factor TF Family: bZIP G-box-binding factor, putative [Ricinus communis]
4 Hb_002163_050 0.0979841781 - - hypothetical protein POPTR_0014s15490g [Populus trichocarpa]
5 Hb_000010_110 0.1002580797 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Jatropha curcas]
6 Hb_001623_270 0.104043505 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
7 Hb_012340_090 0.1051450937 - - PREDICTED: endonuclease III homolog 1, chloroplastic isoform X1 [Populus euphratica]
8 Hb_000176_020 0.1081328818 - - PREDICTED: nuclear pore complex protein NUP43 [Jatropha curcas]
9 Hb_002028_140 0.108701822 transcription factor TF Family: Tify JAZ11 [Hevea brasiliensis]
10 Hb_142368_010 0.110334084 - - mRNA (guanine-7-)methyltransferase, putative [Ricinus communis]
11 Hb_002343_040 0.1120492181 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_000757_030 0.1141332891 - - radical sam protein, putative [Ricinus communis]
13 Hb_001862_210 0.1141933281 - - PREDICTED: LOW QUALITY PROTEIN: salutaridine reductase-like [Citrus sinensis]
14 Hb_001671_040 0.11463821 - - PREDICTED: serine/arginine-rich splicing factor RS31-like isoform X1 [Populus euphratica]
15 Hb_011457_150 0.1147121765 - - PREDICTED: uncharacterized protein LOC105649946 [Jatropha curcas]
16 Hb_007254_020 0.1148061695 - - PREDICTED: uncharacterized protein LOC105629137 [Jatropha curcas]
17 Hb_000059_380 0.1152097082 - - PREDICTED: uncharacterized protein LOC105648668 [Jatropha curcas]
18 Hb_002217_110 0.1162604695 - - PREDICTED: craniofacial development protein 1 [Jatropha curcas]
19 Hb_001025_090 0.1165748413 - - PREDICTED: FKBP12-interacting protein of 37 kDa [Jatropha curcas]
20 Hb_008225_090 0.1176398203 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002542_040 Hb_002542_040 Hb_001953_070 Hb_001953_070 Hb_002542_040--Hb_001953_070 Hb_007533_010 Hb_007533_010 Hb_002542_040--Hb_007533_010 Hb_002163_050 Hb_002163_050 Hb_002542_040--Hb_002163_050 Hb_000010_110 Hb_000010_110 Hb_002542_040--Hb_000010_110 Hb_001623_270 Hb_001623_270 Hb_002542_040--Hb_001623_270 Hb_012340_090 Hb_012340_090 Hb_002542_040--Hb_012340_090 Hb_001953_070--Hb_000010_110 Hb_001671_040 Hb_001671_040 Hb_001953_070--Hb_001671_040 Hb_000144_070 Hb_000144_070 Hb_001953_070--Hb_000144_070 Hb_003213_010 Hb_003213_010 Hb_001953_070--Hb_003213_010 Hb_002820_030 Hb_002820_030 Hb_001953_070--Hb_002820_030 Hb_000025_780 Hb_000025_780 Hb_007533_010--Hb_000025_780 Hb_002338_020 Hb_002338_020 Hb_007533_010--Hb_002338_020 Hb_000227_170 Hb_000227_170 Hb_007533_010--Hb_000227_170 Hb_000181_090 Hb_000181_090 Hb_007533_010--Hb_000181_090 Hb_000424_060 Hb_000424_060 Hb_007533_010--Hb_000424_060 Hb_000260_630 Hb_000260_630 Hb_002163_050--Hb_000260_630 Hb_001863_380 Hb_001863_380 Hb_002163_050--Hb_001863_380 Hb_000049_140 Hb_000049_140 Hb_002163_050--Hb_000049_140 Hb_005144_090 Hb_005144_090 Hb_002163_050--Hb_005144_090 Hb_002600_020 Hb_002600_020 Hb_002163_050--Hb_002600_020 Hb_000270_310 Hb_000270_310 Hb_002163_050--Hb_000270_310 Hb_002553_040 Hb_002553_040 Hb_000010_110--Hb_002553_040 Hb_003001_080 Hb_003001_080 Hb_000010_110--Hb_003001_080 Hb_000522_150 Hb_000522_150 Hb_000010_110--Hb_000522_150 Hb_005271_220 Hb_005271_220 Hb_000010_110--Hb_005271_220 Hb_002217_110 Hb_002217_110 Hb_000010_110--Hb_002217_110 Hb_000176_020 Hb_000176_020 Hb_001623_270--Hb_000176_020 Hb_183433_010 Hb_183433_010 Hb_001623_270--Hb_183433_010 Hb_000789_320 Hb_000789_320 Hb_001623_270--Hb_000789_320 Hb_171900_090 Hb_171900_090 Hb_001623_270--Hb_171900_090 Hb_014834_150 Hb_014834_150 Hb_001623_270--Hb_014834_150 Hb_000230_400 Hb_000230_400 Hb_001623_270--Hb_000230_400 Hb_001105_170 Hb_001105_170 Hb_012340_090--Hb_001105_170 Hb_002343_040 Hb_002343_040 Hb_012340_090--Hb_002343_040 Hb_000035_250 Hb_000035_250 Hb_012340_090--Hb_000035_250 Hb_001025_090 Hb_001025_090 Hb_012340_090--Hb_001025_090 Hb_003848_040 Hb_003848_040 Hb_012340_090--Hb_003848_040 Hb_002284_150 Hb_002284_150 Hb_012340_090--Hb_002284_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.74946 1.85662 3.09877 1.04956 1.76135 0.643429
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.07285 2.31659 1.10103 1.43405 1.74755

CAGE analysis