Hb_005144_090

Information

Type -
Description -
Location Contig5144: 53741-58267
Sequence    

Annotation

kegg
ID cit:102631294
description vacuolar protein sorting-associated protein 24 homolog 1-like
nr
ID XP_006488018.1
description PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1-like [Citrus sinensis]
swissprot
ID Q9FFB3
description Vacuolar protein sorting-associated protein 24 homolog 1 OS=Arabidopsis thaliana GN=VPS24-1 PE=1 SV=1
trembl
ID A0A067EYV2
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027050mg PE=4 SV=1
Gene Ontology
ID GO:0000815
description vacuolar protein sorting-associated protein 24 homolog 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46446: 53753-58189
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005144_090 0.0 - - PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1-like [Citrus sinensis]
2 Hb_011618_050 0.0475334975 - - PREDICTED: uncharacterized protein LOC105634948 [Jatropha curcas]
3 Hb_000049_140 0.0664396303 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Jatropha curcas]
4 Hb_000417_130 0.0710378855 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
5 Hb_000297_160 0.0713533406 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
6 Hb_002013_020 0.0747724404 - - PREDICTED: uncharacterized protein LOC105641613 [Jatropha curcas]
7 Hb_123915_040 0.0749870888 - - PREDICTED: uncharacterized protein LOC105633952 [Jatropha curcas]
8 Hb_000816_250 0.0764939196 - - PREDICTED: uncharacterized protein LOC105649197 isoform X1 [Jatropha curcas]
9 Hb_001012_010 0.0775241841 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]
10 Hb_000317_470 0.0785391284 - - PREDICTED: CCR4-NOT transcription complex subunit 11 [Jatropha curcas]
11 Hb_000245_220 0.079030227 - - PREDICTED: uncharacterized protein LOC105635566 [Jatropha curcas]
12 Hb_001268_240 0.0793112272 - - PREDICTED: uncharacterized protein LOC105630174 isoform X2 [Jatropha curcas]
13 Hb_001357_350 0.0804019694 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000575_040 0.0804979238 - - PREDICTED: serine/arginine-rich splicing factor SC35 [Jatropha curcas]
15 Hb_000331_110 0.0810539102 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
16 Hb_000336_210 0.0820829967 - - PREDICTED: probable adenylate kinase 7, mitochondrial [Jatropha curcas]
17 Hb_000875_080 0.082594456 - - PREDICTED: (+)-delta-cadinene synthase isozyme XC14-like isoform X2 [Gossypium raimondii]
18 Hb_003185_010 0.0828430263 - - PREDICTED: V-type proton ATPase subunit c''1 [Jatropha curcas]
19 Hb_000905_110 0.0831380891 - - arginine/serine rich splicing factor sf4/14, putative [Ricinus communis]
20 Hb_005588_030 0.0834761155 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Eucalyptus grandis]

Gene co-expression network

sample Hb_005144_090 Hb_005144_090 Hb_011618_050 Hb_011618_050 Hb_005144_090--Hb_011618_050 Hb_000049_140 Hb_000049_140 Hb_005144_090--Hb_000049_140 Hb_000417_130 Hb_000417_130 Hb_005144_090--Hb_000417_130 Hb_000297_160 Hb_000297_160 Hb_005144_090--Hb_000297_160 Hb_002013_020 Hb_002013_020 Hb_005144_090--Hb_002013_020 Hb_123915_040 Hb_123915_040 Hb_005144_090--Hb_123915_040 Hb_000046_040 Hb_000046_040 Hb_011618_050--Hb_000046_040 Hb_000649_230 Hb_000649_230 Hb_011618_050--Hb_000649_230 Hb_000751_030 Hb_000751_030 Hb_011618_050--Hb_000751_030 Hb_011618_050--Hb_000049_140 Hb_000245_220 Hb_000245_220 Hb_011618_050--Hb_000245_220 Hb_000875_080 Hb_000875_080 Hb_000049_140--Hb_000875_080 Hb_000336_210 Hb_000336_210 Hb_000049_140--Hb_000336_210 Hb_004453_130 Hb_004453_130 Hb_000049_140--Hb_004453_130 Hb_000049_140--Hb_000297_160 Hb_000417_130--Hb_123915_040 Hb_001357_250 Hb_001357_250 Hb_000417_130--Hb_001357_250 Hb_001357_350 Hb_001357_350 Hb_000417_130--Hb_001357_350 Hb_001268_240 Hb_001268_240 Hb_000417_130--Hb_001268_240 Hb_000035_470 Hb_000035_470 Hb_000417_130--Hb_000035_470 Hb_063716_100 Hb_063716_100 Hb_000417_130--Hb_063716_100 Hb_000297_160--Hb_000875_080 Hb_000270_680 Hb_000270_680 Hb_000297_160--Hb_000270_680 Hb_000297_160--Hb_000336_210 Hb_001959_110 Hb_001959_110 Hb_000297_160--Hb_001959_110 Hb_002272_050 Hb_002272_050 Hb_000297_160--Hb_002272_050 Hb_004052_080 Hb_004052_080 Hb_002013_020--Hb_004052_080 Hb_003513_010 Hb_003513_010 Hb_002013_020--Hb_003513_010 Hb_001456_060 Hb_001456_060 Hb_002013_020--Hb_001456_060 Hb_001163_050 Hb_001163_050 Hb_002013_020--Hb_001163_050 Hb_032202_140 Hb_032202_140 Hb_002013_020--Hb_032202_140 Hb_002876_230 Hb_002876_230 Hb_002013_020--Hb_002876_230 Hb_000317_470 Hb_000317_470 Hb_123915_040--Hb_000317_470 Hb_004254_090 Hb_004254_090 Hb_123915_040--Hb_004254_090 Hb_123915_040--Hb_001357_250 Hb_000905_110 Hb_000905_110 Hb_123915_040--Hb_000905_110 Hb_001021_150 Hb_001021_150 Hb_123915_040--Hb_001021_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.5117 15.2227 39.2784 22.5852 33.379 21.2046
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.7025 30.7351 21.8649 25.287 20.5674

CAGE analysis