Hb_000751_030

Information

Type -
Description -
Location Contig751: 36790-44209
Sequence    

Annotation

kegg
ID rcu:RCOM_0119500
description Vesicle transport protein GOT1B, putative
nr
ID XP_002531025.1
description Vesicle transport protein GOT1B, putative [Ricinus communis]
swissprot
ID Q9DCQ3
description Vesicle transport protein GOT1A OS=Mus musculus GN=Golt1a PE=2 SV=1
trembl
ID B9SYF6
description Vesicle transport protein GOT1B, putative OS=Ricinus communis GN=RCOM_0119500 PE=4 SV=1
Gene Ontology
ID GO:0016192
description vesicle transport protein got1b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56846: 36795-45765 , PASA_asmbl_56847: 37766-38032 , PASA_asmbl_56848: 37135-42272
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000751_030 0.0 - - Vesicle transport protein GOT1B, putative [Ricinus communis]
2 Hb_001501_080 0.0329206946 - - PREDICTED: uncharacterized protein LOC105640832 isoform X1 [Jatropha curcas]
3 Hb_000392_230 0.061386446 - - conserved hypothetical protein [Ricinus communis]
4 Hb_007007_040 0.0686203416 desease resistance Gene Name: ArsA_ATPase arsenical pump-driving atpase, putative [Ricinus communis]
5 Hb_000776_100 0.0728184054 - - Cleavage stimulation factor 50 kDa subunit, putative [Ricinus communis]
6 Hb_011618_050 0.0734677417 - - PREDICTED: uncharacterized protein LOC105634948 [Jatropha curcas]
7 Hb_000414_050 0.0760141701 - - hypothetical protein JCGZ_19588 [Jatropha curcas]
8 Hb_003760_030 0.0776983952 - - PREDICTED: novel plant SNARE 13 [Jatropha curcas]
9 Hb_002783_170 0.0783002385 - - PREDICTED: BRCA1-A complex subunit BRE isoform X2 [Jatropha curcas]
10 Hb_000959_230 0.0792407868 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]
11 Hb_002054_050 0.0794251791 - - PREDICTED: uncharacterized protein LOC105641285 [Jatropha curcas]
12 Hb_003119_090 0.0833567243 - - PREDICTED: 14-3-3 protein 6 [Jatropha curcas]
13 Hb_002836_140 0.0836758858 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
14 Hb_001804_110 0.0838005289 - - hypothetical protein CISIN_1g031200mg [Citrus sinensis]
15 Hb_010315_060 0.084648418 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
16 Hb_002042_030 0.0858510884 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
17 Hb_001195_260 0.086321259 - - Mitochondrial 50S ribosomal protein L27 [Hevea brasiliensis]
18 Hb_000879_180 0.0884621026 - - XPA-binding protein, putative [Ricinus communis]
19 Hb_000915_080 0.0892678566 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
20 Hb_000138_130 0.0899850396 - - hypothetical protein JCGZ_25540 [Jatropha curcas]

Gene co-expression network

sample Hb_000751_030 Hb_000751_030 Hb_001501_080 Hb_001501_080 Hb_000751_030--Hb_001501_080 Hb_000392_230 Hb_000392_230 Hb_000751_030--Hb_000392_230 Hb_007007_040 Hb_007007_040 Hb_000751_030--Hb_007007_040 Hb_000776_100 Hb_000776_100 Hb_000751_030--Hb_000776_100 Hb_011618_050 Hb_011618_050 Hb_000751_030--Hb_011618_050 Hb_000414_050 Hb_000414_050 Hb_000751_030--Hb_000414_050 Hb_002054_050 Hb_002054_050 Hb_001501_080--Hb_002054_050 Hb_005463_130 Hb_005463_130 Hb_001501_080--Hb_005463_130 Hb_001501_080--Hb_000392_230 Hb_001501_080--Hb_007007_040 Hb_003760_030 Hb_003760_030 Hb_001501_080--Hb_003760_030 Hb_010315_060 Hb_010315_060 Hb_000392_230--Hb_010315_060 Hb_000649_230 Hb_000649_230 Hb_000392_230--Hb_000649_230 Hb_022132_050 Hb_022132_050 Hb_000392_230--Hb_022132_050 Hb_001195_260 Hb_001195_260 Hb_000392_230--Hb_001195_260 Hb_073973_130 Hb_073973_130 Hb_000392_230--Hb_073973_130 Hb_003119_090 Hb_003119_090 Hb_007007_040--Hb_003119_090 Hb_000019_190 Hb_000019_190 Hb_007007_040--Hb_000019_190 Hb_023313_040 Hb_023313_040 Hb_007007_040--Hb_023313_040 Hb_007007_040--Hb_003760_030 Hb_000006_010 Hb_000006_010 Hb_007007_040--Hb_000006_010 Hb_000776_100--Hb_000414_050 Hb_003038_120 Hb_003038_120 Hb_000776_100--Hb_003038_120 Hb_000138_130 Hb_000138_130 Hb_000776_100--Hb_000138_130 Hb_006588_070 Hb_006588_070 Hb_000776_100--Hb_006588_070 Hb_000101_380 Hb_000101_380 Hb_000776_100--Hb_000101_380 Hb_002783_170 Hb_002783_170 Hb_000776_100--Hb_002783_170 Hb_005144_090 Hb_005144_090 Hb_011618_050--Hb_005144_090 Hb_000046_040 Hb_000046_040 Hb_011618_050--Hb_000046_040 Hb_011618_050--Hb_000649_230 Hb_000049_140 Hb_000049_140 Hb_011618_050--Hb_000049_140 Hb_000245_220 Hb_000245_220 Hb_011618_050--Hb_000245_220 Hb_000414_050--Hb_002783_170 Hb_002042_030 Hb_002042_030 Hb_000414_050--Hb_002042_030 Hb_000414_050--Hb_000138_130 Hb_002836_140 Hb_002836_140 Hb_000414_050--Hb_002836_140 Hb_000915_080 Hb_000915_080 Hb_000414_050--Hb_000915_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.0601 11.3024 28.6028 21.9385 22.6629 18.7842
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.0239 16.8915 11.4324 9.90749 11.4927

CAGE analysis