Hb_002553_040

Information

Type -
Description -
Location Contig2553: 20686-22996
Sequence    

Annotation

kegg
ID rcu:RCOM_0491730
description DNA binding protein, putative
nr
ID XP_012069805.1
description PREDICTED: transcription factor bHLH104 [Jatropha curcas]
swissprot
ID Q8L467
description Transcription factor bHLH104 OS=Arabidopsis thaliana GN=BHLH104 PE=2 SV=1
trembl
ID A0A067KZD1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02311 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor bhlh104

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002553_040 0.0 - - PREDICTED: transcription factor bHLH104 [Jatropha curcas]
2 Hb_000010_110 0.0721555538 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Jatropha curcas]
3 Hb_003020_270 0.0862186676 - - PREDICTED: ras-related protein Rab2BV [Jatropha curcas]
4 Hb_000886_050 0.0864719469 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
5 Hb_000522_150 0.0877341605 - - PREDICTED: uncharacterized protein LOC105646670 [Jatropha curcas]
6 Hb_000487_210 0.0891804891 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
7 Hb_005116_060 0.0898026404 - - PREDICTED: mitochondrial Rho GTPase 2 isoform X1 [Jatropha curcas]
8 Hb_000705_170 0.0907371688 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46870 [Jatropha curcas]
9 Hb_095296_010 0.0918960943 - - PREDICTED: syntaxin-32 [Jatropha curcas]
10 Hb_152175_010 0.0944665628 - - Protein grpE, putative [Ricinus communis]
11 Hb_000076_160 0.095130978 - - PREDICTED: AP-5 complex subunit zeta-1 [Jatropha curcas]
12 Hb_000340_400 0.0958732743 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
13 Hb_002217_110 0.0966609573 - - PREDICTED: craniofacial development protein 1 [Jatropha curcas]
14 Hb_006588_210 0.0969957288 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
15 Hb_000402_080 0.0976564845 - - PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Jatropha curcas]
16 Hb_001898_240 0.098049299 - - PREDICTED: uncharacterized protein LOC105779688 [Gossypium raimondii]
17 Hb_001864_070 0.0998636257 - - PREDICTED: probable histone H2A.3 [Jatropha curcas]
18 Hb_009545_090 0.1002651777 - - hypothetical protein JCGZ_02186 [Jatropha curcas]
19 Hb_000358_230 0.1013812808 - - protein phosphatases pp1 regulatory subunit, putative [Ricinus communis]
20 Hb_003142_030 0.1015284914 - - PREDICTED: probable plastid-lipid-associated protein 14, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002553_040 Hb_002553_040 Hb_000010_110 Hb_000010_110 Hb_002553_040--Hb_000010_110 Hb_003020_270 Hb_003020_270 Hb_002553_040--Hb_003020_270 Hb_000886_050 Hb_000886_050 Hb_002553_040--Hb_000886_050 Hb_000522_150 Hb_000522_150 Hb_002553_040--Hb_000522_150 Hb_000487_210 Hb_000487_210 Hb_002553_040--Hb_000487_210 Hb_005116_060 Hb_005116_060 Hb_002553_040--Hb_005116_060 Hb_001953_070 Hb_001953_070 Hb_000010_110--Hb_001953_070 Hb_003001_080 Hb_003001_080 Hb_000010_110--Hb_003001_080 Hb_000010_110--Hb_000522_150 Hb_005271_220 Hb_005271_220 Hb_000010_110--Hb_005271_220 Hb_002217_110 Hb_002217_110 Hb_000010_110--Hb_002217_110 Hb_095296_010 Hb_095296_010 Hb_003020_270--Hb_095296_010 Hb_006816_350 Hb_006816_350 Hb_003020_270--Hb_006816_350 Hb_000179_070 Hb_000179_070 Hb_003020_270--Hb_000179_070 Hb_000868_110 Hb_000868_110 Hb_003020_270--Hb_000868_110 Hb_000696_090 Hb_000696_090 Hb_003020_270--Hb_000696_090 Hb_002078_220 Hb_002078_220 Hb_000886_050--Hb_002078_220 Hb_000861_080 Hb_000861_080 Hb_000886_050--Hb_000861_080 Hb_002890_290 Hb_002890_290 Hb_000886_050--Hb_002890_290 Hb_003464_090 Hb_003464_090 Hb_000886_050--Hb_003464_090 Hb_000076_160 Hb_000076_160 Hb_000886_050--Hb_000076_160 Hb_005653_090 Hb_005653_090 Hb_000886_050--Hb_005653_090 Hb_000738_020 Hb_000738_020 Hb_000522_150--Hb_000738_020 Hb_000869_080 Hb_000869_080 Hb_000522_150--Hb_000869_080 Hb_002205_110 Hb_002205_110 Hb_000522_150--Hb_002205_110 Hb_000522_150--Hb_005271_220 Hb_024958_010 Hb_024958_010 Hb_000522_150--Hb_024958_010 Hb_002585_040 Hb_002585_040 Hb_000487_210--Hb_002585_040 Hb_012753_170 Hb_012753_170 Hb_000487_210--Hb_012753_170 Hb_000979_170 Hb_000979_170 Hb_000487_210--Hb_000979_170 Hb_000679_310 Hb_000679_310 Hb_000487_210--Hb_000679_310 Hb_004970_090 Hb_004970_090 Hb_000487_210--Hb_004970_090 Hb_033834_030 Hb_033834_030 Hb_000487_210--Hb_033834_030 Hb_000340_400 Hb_000340_400 Hb_005116_060--Hb_000340_400 Hb_007035_050 Hb_007035_050 Hb_005116_060--Hb_007035_050 Hb_005116_060--Hb_095296_010 Hb_006478_040 Hb_006478_040 Hb_005116_060--Hb_006478_040 Hb_001030_020 Hb_001030_020 Hb_005116_060--Hb_001030_020 Hb_005116_060--Hb_003001_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.5295 17.883 15.2342 12.5257 12.883 8.10549
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.6092 16.8908 6.3625 7.34413 6.53417

CAGE analysis