Hb_000696_090

Information

Type -
Description -
Location Contig696: 47147-50271
Sequence    

Annotation

kegg
ID pvu:PHAVU_003G266300g
description hypothetical protein
nr
ID XP_012088474.1
description PREDICTED: uncharacterized protein LOC105647093 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JMB9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25356 PE=4 SV=1
Gene Ontology
ID GO:0006950
description universal stress protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54577: 47154-50240 , PASA_asmbl_54579: 47206-48323
cDNA
(Sanger)
(ID:Location)		 021_H06.ab1: 47287-49918 , 040_C20.ab1: 47154-49827 , 045_A21.ab1: 47154-49823

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000696_090 0.0 - - PREDICTED: uncharacterized protein LOC105647093 [Jatropha curcas]
2 Hb_003142_030 0.0772795513 - - PREDICTED: probable plastid-lipid-associated protein 14, chloroplastic [Jatropha curcas]
3 Hb_152175_010 0.082878272 - - Protein grpE, putative [Ricinus communis]
4 Hb_095296_010 0.0850291296 - - PREDICTED: syntaxin-32 [Jatropha curcas]
5 Hb_003020_270 0.0879581242 - - PREDICTED: ras-related protein Rab2BV [Jatropha curcas]
6 Hb_012055_060 0.0899921205 - - PREDICTED: uncharacterized protein LOC105639799 isoform X1 [Jatropha curcas]
7 Hb_000179_070 0.0905964135 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
8 Hb_000886_050 0.0936023814 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
9 Hb_000000_270 0.0956615905 - - PREDICTED: E3 ubiquitin-protein ligase RNF185 [Jatropha curcas]
10 Hb_003001_080 0.0963484277 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
11 Hb_004324_110 0.0973718863 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]
12 Hb_000868_110 0.0996326658 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
13 Hb_005116_060 0.1014389498 - - PREDICTED: mitochondrial Rho GTPase 2 isoform X1 [Jatropha curcas]
14 Hb_004586_140 0.1017080434 - - PREDICTED: uncharacterized protein LOC105630689 [Jatropha curcas]
15 Hb_000613_090 0.1017333146 - - PREDICTED: uncharacterized protein LOC105641542 isoform X1 [Jatropha curcas]
16 Hb_000563_230 0.1023911574 - - phospholipase d zeta, putative [Ricinus communis]
17 Hb_000500_100 0.1025865713 - - peptide methionine sulfoxide reductase A1-like [Jatropha curcas]
18 Hb_005016_160 0.1026823012 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
19 Hb_002890_290 0.1037506145 - - PREDICTED: outer envelope protein 64, mitochondrial [Jatropha curcas]
20 Hb_006816_350 0.1039744151 - - PREDICTED: syntaxin-43 [Jatropha curcas]

Gene co-expression network

sample Hb_000696_090 Hb_000696_090 Hb_003142_030 Hb_003142_030 Hb_000696_090--Hb_003142_030 Hb_152175_010 Hb_152175_010 Hb_000696_090--Hb_152175_010 Hb_095296_010 Hb_095296_010 Hb_000696_090--Hb_095296_010 Hb_003020_270 Hb_003020_270 Hb_000696_090--Hb_003020_270 Hb_012055_060 Hb_012055_060 Hb_000696_090--Hb_012055_060 Hb_000179_070 Hb_000179_070 Hb_000696_090--Hb_000179_070 Hb_003142_030--Hb_152175_010 Hb_003001_080 Hb_003001_080 Hb_003142_030--Hb_003001_080 Hb_000424_060 Hb_000424_060 Hb_003142_030--Hb_000424_060 Hb_001227_030 Hb_001227_030 Hb_003142_030--Hb_001227_030 Hb_003929_280 Hb_003929_280 Hb_003142_030--Hb_003929_280 Hb_005137_050 Hb_005137_050 Hb_152175_010--Hb_005137_050 Hb_152175_010--Hb_003001_080 Hb_000563_230 Hb_000563_230 Hb_152175_010--Hb_000563_230 Hb_002890_290 Hb_002890_290 Hb_152175_010--Hb_002890_290 Hb_152175_010--Hb_001227_030 Hb_142368_010 Hb_142368_010 Hb_152175_010--Hb_142368_010 Hb_000868_110 Hb_000868_110 Hb_095296_010--Hb_000868_110 Hb_002073_200 Hb_002073_200 Hb_095296_010--Hb_002073_200 Hb_005116_060 Hb_005116_060 Hb_095296_010--Hb_005116_060 Hb_095296_010--Hb_003020_270 Hb_006816_350 Hb_006816_350 Hb_095296_010--Hb_006816_350 Hb_000869_080 Hb_000869_080 Hb_095296_010--Hb_000869_080 Hb_003020_270--Hb_006816_350 Hb_003020_270--Hb_000179_070 Hb_003020_270--Hb_000868_110 Hb_002553_040 Hb_002553_040 Hb_003020_270--Hb_002553_040 Hb_000243_250 Hb_000243_250 Hb_012055_060--Hb_000243_250 Hb_005016_160 Hb_005016_160 Hb_012055_060--Hb_005016_160 Hb_003055_060 Hb_003055_060 Hb_012055_060--Hb_003055_060 Hb_001005_190 Hb_001005_190 Hb_012055_060--Hb_001005_190 Hb_011491_010 Hb_011491_010 Hb_012055_060--Hb_011491_010 Hb_008511_090 Hb_008511_090 Hb_012055_060--Hb_008511_090 Hb_004586_140 Hb_004586_140 Hb_000179_070--Hb_004586_140 Hb_000179_070--Hb_006816_350 Hb_000661_290 Hb_000661_290 Hb_000179_070--Hb_000661_290 Hb_000179_070--Hb_095296_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
85.4409 143.679 77.9296 59.5239 97.8305 76.494
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
123.019 105.453 78.5063 37.6945 54.0489

CAGE analysis