Hb_003020_270

Information

Type -
Description -
Location Contig3020: 164581-166833
Sequence    

Annotation

kegg
ID rcu:RCOM_0732500
description protein with unknown function (EC:3.1.4.12)
nr
ID XP_012066946.1
description PREDICTED: ras-related protein Rab2BV [Jatropha curcas]
swissprot
ID Q40193
description Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1
trembl
ID A0A067LDP3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02924 PE=3 SV=1
Gene Ontology
ID GO:0005622
description ras-related protein rab11c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31865: 166108-166603 , PASA_asmbl_31867: 164758-166813 , PASA_asmbl_31868: 167515-168918
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003020_270 0.0 - - PREDICTED: ras-related protein Rab2BV [Jatropha curcas]
2 Hb_095296_010 0.0717845615 - - PREDICTED: syntaxin-32 [Jatropha curcas]
3 Hb_006816_350 0.0763590348 - - PREDICTED: syntaxin-43 [Jatropha curcas]
4 Hb_000179_070 0.0818715882 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
5 Hb_000868_110 0.0854862232 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
6 Hb_002553_040 0.0862186676 - - PREDICTED: transcription factor bHLH104 [Jatropha curcas]
7 Hb_000696_090 0.0879581242 - - PREDICTED: uncharacterized protein LOC105647093 [Jatropha curcas]
8 Hb_000661_290 0.0916263297 - - PREDICTED: NAD(H) kinase 1-like isoform X1 [Populus euphratica]
9 Hb_005016_160 0.0925083635 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
10 Hb_004586_140 0.099075494 - - PREDICTED: uncharacterized protein LOC105630689 [Jatropha curcas]
11 Hb_152175_010 0.0996266418 - - Protein grpE, putative [Ricinus communis]
12 Hb_002073_200 0.1017387321 - - Phosphatase 2A-2 [Theobroma cacao]
13 Hb_000019_050 0.1021133357 - - PREDICTED: protein NETWORKED 3A-like [Jatropha curcas]
14 Hb_005306_190 0.1026121009 - - Mitochondrial import inner membrane translocase subunit tim23, putative [Ricinus communis]
15 Hb_005541_010 0.1046175198 - - PREDICTED: uncharacterized protein LOC105629250 [Jatropha curcas]
16 Hb_000120_330 0.1066800785 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003142_030 0.1075639079 - - PREDICTED: probable plastid-lipid-associated protein 14, chloroplastic [Jatropha curcas]
18 Hb_000886_050 0.1080986787 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
19 Hb_005288_170 0.1115167345 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08610 [Populus euphratica]
20 Hb_000144_100 0.1126993036 - - PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_003020_270 Hb_003020_270 Hb_095296_010 Hb_095296_010 Hb_003020_270--Hb_095296_010 Hb_006816_350 Hb_006816_350 Hb_003020_270--Hb_006816_350 Hb_000179_070 Hb_000179_070 Hb_003020_270--Hb_000179_070 Hb_000868_110 Hb_000868_110 Hb_003020_270--Hb_000868_110 Hb_002553_040 Hb_002553_040 Hb_003020_270--Hb_002553_040 Hb_000696_090 Hb_000696_090 Hb_003020_270--Hb_000696_090 Hb_095296_010--Hb_000868_110 Hb_002073_200 Hb_002073_200 Hb_095296_010--Hb_002073_200 Hb_005116_060 Hb_005116_060 Hb_095296_010--Hb_005116_060 Hb_095296_010--Hb_006816_350 Hb_000869_080 Hb_000869_080 Hb_095296_010--Hb_000869_080 Hb_000661_290 Hb_000661_290 Hb_006816_350--Hb_000661_290 Hb_000357_110 Hb_000357_110 Hb_006816_350--Hb_000357_110 Hb_006816_350--Hb_000868_110 Hb_006816_350--Hb_000179_070 Hb_004586_140 Hb_004586_140 Hb_000179_070--Hb_004586_140 Hb_000179_070--Hb_000661_290 Hb_000179_070--Hb_095296_010 Hb_000179_070--Hb_000696_090 Hb_000868_110--Hb_002073_200 Hb_164010_040 Hb_164010_040 Hb_000868_110--Hb_164010_040 Hb_003001_080 Hb_003001_080 Hb_000868_110--Hb_003001_080 Hb_021576_110 Hb_021576_110 Hb_000868_110--Hb_021576_110 Hb_000868_110--Hb_000869_080 Hb_000010_110 Hb_000010_110 Hb_002553_040--Hb_000010_110 Hb_000886_050 Hb_000886_050 Hb_002553_040--Hb_000886_050 Hb_000522_150 Hb_000522_150 Hb_002553_040--Hb_000522_150 Hb_000487_210 Hb_000487_210 Hb_002553_040--Hb_000487_210 Hb_002553_040--Hb_005116_060 Hb_003142_030 Hb_003142_030 Hb_000696_090--Hb_003142_030 Hb_152175_010 Hb_152175_010 Hb_000696_090--Hb_152175_010 Hb_000696_090--Hb_095296_010 Hb_012055_060 Hb_012055_060 Hb_000696_090--Hb_012055_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.4999 38.4932 25.2542 23.9468 24.0424 16.6401
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.2507 33.64 21.6301 7.93293 12.0664

CAGE analysis