Hb_002163_050

Information

Type -
Description -
Location Contig2163: 120056-121437
Sequence    

Annotation

kegg
ID pop:POPTR_0014s15490g
description POPTRDRAFT_732281; hypothetical protein
nr
ID XP_002320477.2
description hypothetical protein POPTR_0014s15490g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9IAI5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s15490g PE=4 SV=2
Gene Ontology
ID GO:0009507
description coiled-coil domain-containing protein isoform partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22376: 120189-121705
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002163_050 0.0 - - hypothetical protein POPTR_0014s15490g [Populus trichocarpa]
2 Hb_000260_630 0.078971226 - - PREDICTED: altered inheritance rate of mitochondria protein 25 isoform X1 [Jatropha curcas]
3 Hb_001863_380 0.0839885963 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]
4 Hb_000049_140 0.0840330976 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Jatropha curcas]
5 Hb_005144_090 0.0869311058 - - PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1-like [Citrus sinensis]
6 Hb_002600_020 0.0873848329 - - unnamed protein product [Vitis vinifera]
7 Hb_000270_310 0.0887374603 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Populus euphratica]
8 Hb_003213_010 0.0890096294 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
9 Hb_003861_060 0.0893549454 - - PREDICTED: treacle protein [Jatropha curcas]
10 Hb_002343_040 0.089588567 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_012565_070 0.0898382309 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
12 Hb_032202_140 0.0898862296 - - PREDICTED: flap endonuclease GEN-like 1 [Jatropha curcas]
13 Hb_000875_080 0.0912441541 - - PREDICTED: (+)-delta-cadinene synthase isozyme XC14-like isoform X2 [Gossypium raimondii]
14 Hb_000010_110 0.0920684891 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Jatropha curcas]
15 Hb_004058_030 0.0924248424 - - PREDICTED: stomatin-like protein 2, mitochondrial [Jatropha curcas]
16 Hb_002272_050 0.0929261118 - - microsomal signal peptidase 23 kD subunit, putative [Ricinus communis]
17 Hb_000684_380 0.0931701619 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
18 Hb_000589_120 0.0937227219 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Gossypium raimondii]
19 Hb_001953_070 0.0938040401 - - PREDICTED: RNA pseudouridine synthase 7 isoform X2 [Jatropha curcas]
20 Hb_003001_080 0.09396822 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]

Gene co-expression network

sample Hb_002163_050 Hb_002163_050 Hb_000260_630 Hb_000260_630 Hb_002163_050--Hb_000260_630 Hb_001863_380 Hb_001863_380 Hb_002163_050--Hb_001863_380 Hb_000049_140 Hb_000049_140 Hb_002163_050--Hb_000049_140 Hb_005144_090 Hb_005144_090 Hb_002163_050--Hb_005144_090 Hb_002600_020 Hb_002600_020 Hb_002163_050--Hb_002600_020 Hb_000270_310 Hb_000270_310 Hb_002163_050--Hb_000270_310 Hb_000976_120 Hb_000976_120 Hb_000260_630--Hb_000976_120 Hb_003861_060 Hb_003861_060 Hb_000260_630--Hb_003861_060 Hb_000875_080 Hb_000875_080 Hb_000260_630--Hb_000875_080 Hb_005271_040 Hb_005271_040 Hb_000260_630--Hb_005271_040 Hb_005000_170 Hb_005000_170 Hb_000260_630--Hb_005000_170 Hb_001472_100 Hb_001472_100 Hb_000260_630--Hb_001472_100 Hb_000413_240 Hb_000413_240 Hb_001863_380--Hb_000413_240 Hb_002946_190 Hb_002946_190 Hb_001863_380--Hb_002946_190 Hb_002343_040 Hb_002343_040 Hb_001863_380--Hb_002343_040 Hb_012565_070 Hb_012565_070 Hb_001863_380--Hb_012565_070 Hb_000373_050 Hb_000373_050 Hb_001863_380--Hb_000373_050 Hb_002759_190 Hb_002759_190 Hb_001863_380--Hb_002759_190 Hb_000049_140--Hb_000875_080 Hb_000049_140--Hb_005144_090 Hb_000336_210 Hb_000336_210 Hb_000049_140--Hb_000336_210 Hb_004453_130 Hb_004453_130 Hb_000049_140--Hb_004453_130 Hb_011618_050 Hb_011618_050 Hb_000049_140--Hb_011618_050 Hb_000297_160 Hb_000297_160 Hb_000049_140--Hb_000297_160 Hb_005144_090--Hb_011618_050 Hb_000417_130 Hb_000417_130 Hb_005144_090--Hb_000417_130 Hb_005144_090--Hb_000297_160 Hb_002013_020 Hb_002013_020 Hb_005144_090--Hb_002013_020 Hb_123915_040 Hb_123915_040 Hb_005144_090--Hb_123915_040 Hb_032202_140 Hb_032202_140 Hb_002600_020--Hb_032202_140 Hb_000181_110 Hb_000181_110 Hb_002600_020--Hb_000181_110 Hb_002530_030 Hb_002530_030 Hb_002600_020--Hb_002530_030 Hb_001163_050 Hb_001163_050 Hb_002600_020--Hb_001163_050 Hb_000684_380 Hb_000684_380 Hb_002600_020--Hb_000684_380 Hb_153553_030 Hb_153553_030 Hb_002600_020--Hb_153553_030 Hb_161574_020 Hb_161574_020 Hb_000270_310--Hb_161574_020 Hb_001278_100 Hb_001278_100 Hb_000270_310--Hb_001278_100 Hb_000086_170 Hb_000086_170 Hb_000270_310--Hb_000086_170 Hb_002936_010 Hb_002936_010 Hb_000270_310--Hb_002936_010 Hb_164010_040 Hb_164010_040 Hb_000270_310--Hb_164010_040 Hb_007878_010 Hb_007878_010 Hb_000270_310--Hb_007878_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.37489 5.34445 11.1248 5.2168 7.16263 4.1522
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.24108 10.0238 6.09178 5.75459 4.47817

CAGE analysis