Hb_153553_030

Information

Type -
Description -
Location Contig153553: 42575-48515
Sequence    

Annotation

kegg
ID rcu:RCOM_1450080
description cellular nucleic acid binding protein, putative
nr
ID XP_012084449.1
description PREDICTED: zinc finger protein GIS2 [Jatropha curcas]
swissprot
ID Q04832
description DNA-binding protein HEXBP OS=Leishmania major GN=HEXBP PE=3 SV=1
trembl
ID A0A067K5W8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19650 PE=4 SV=1
Gene Ontology
ID GO:0003677
description zinc finger protein gis2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13208: 42602-48467 , PASA_asmbl_13210: 42628-45049 , PASA_asmbl_13211: 45101-45459 , PASA_asmbl_13214: 43738-43871
cDNA
(Sanger)
(ID:Location)		 001_G12.ab1: 42667-48101 , 051_D24.ab1: 42667-48046

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_153553_030 0.0 - - PREDICTED: zinc finger protein GIS2 [Jatropha curcas]
2 Hb_003621_020 0.0748174823 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
3 Hb_002600_020 0.0762965846 - - unnamed protein product [Vitis vinifera]
4 Hb_005588_030 0.0775030913 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Eucalyptus grandis]
5 Hb_000866_410 0.0780339916 - - hypothetical protein JCGZ_14422 [Jatropha curcas]
6 Hb_000638_290 0.0797320345 - - PREDICTED: 5' exonuclease Apollo [Jatropha curcas]
7 Hb_000009_530 0.0799133809 - - PREDICTED: uncharacterized protein LOC105639628 [Jatropha curcas]
8 Hb_005488_140 0.0855773037 - - 30S ribosomal protein S5, putative [Ricinus communis]
9 Hb_120410_010 0.0861928653 - - PREDICTED: vesicle-associated membrane protein 727-like [Solanum tuberosum]
10 Hb_000610_010 0.086842805 - - PREDICTED: SKP1-like protein 1B [Musa acuminata subsp. malaccensis]
11 Hb_003001_080 0.0890065164 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
12 Hb_001456_060 0.0891591923 - - hypothetical protein JCGZ_17090 [Jatropha curcas]
13 Hb_073973_130 0.0895150607 - - PREDICTED: prolyl-tRNA synthetase associated domain-containing protein 1 [Jatropha curcas]
14 Hb_002217_110 0.0904291683 - - PREDICTED: craniofacial development protein 1 [Jatropha curcas]
15 Hb_008453_140 0.0907909775 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
16 Hb_000959_210 0.0908421274 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 27 [Jatropha curcas]
17 Hb_002740_030 0.0910657636 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
18 Hb_004116_060 0.0919692161 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
19 Hb_000868_110 0.0925417281 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
20 Hb_000181_110 0.0946591874 - - PREDICTED: uncharacterized protein LOC105637521 [Jatropha curcas]

Gene co-expression network

sample Hb_153553_030 Hb_153553_030 Hb_003621_020 Hb_003621_020 Hb_153553_030--Hb_003621_020 Hb_002600_020 Hb_002600_020 Hb_153553_030--Hb_002600_020 Hb_005588_030 Hb_005588_030 Hb_153553_030--Hb_005588_030 Hb_000866_410 Hb_000866_410 Hb_153553_030--Hb_000866_410 Hb_000638_290 Hb_000638_290 Hb_153553_030--Hb_000638_290 Hb_000009_530 Hb_000009_530 Hb_153553_030--Hb_000009_530 Hb_003621_020--Hb_000009_530 Hb_001898_240 Hb_001898_240 Hb_003621_020--Hb_001898_240 Hb_003621_020--Hb_000638_290 Hb_012016_010 Hb_012016_010 Hb_003621_020--Hb_012016_010 Hb_180424_010 Hb_180424_010 Hb_003621_020--Hb_180424_010 Hb_032202_140 Hb_032202_140 Hb_002600_020--Hb_032202_140 Hb_000181_110 Hb_000181_110 Hb_002600_020--Hb_000181_110 Hb_002530_030 Hb_002530_030 Hb_002600_020--Hb_002530_030 Hb_001163_050 Hb_001163_050 Hb_002600_020--Hb_001163_050 Hb_000684_380 Hb_000684_380 Hb_002600_020--Hb_000684_380 Hb_001012_010 Hb_001012_010 Hb_005588_030--Hb_001012_010 Hb_004116_060 Hb_004116_060 Hb_005588_030--Hb_004116_060 Hb_004093_090 Hb_004093_090 Hb_005588_030--Hb_004093_090 Hb_000107_030 Hb_000107_030 Hb_005588_030--Hb_000107_030 Hb_073973_130 Hb_073973_130 Hb_005588_030--Hb_073973_130 Hb_120410_010 Hb_120410_010 Hb_005588_030--Hb_120410_010 Hb_012384_030 Hb_012384_030 Hb_000866_410--Hb_012384_030 Hb_002217_110 Hb_002217_110 Hb_000866_410--Hb_002217_110 Hb_008453_140 Hb_008453_140 Hb_000866_410--Hb_008453_140 Hb_000866_410--Hb_120410_010 Hb_029142_060 Hb_029142_060 Hb_000866_410--Hb_029142_060 Hb_000866_410--Hb_004093_090 Hb_000638_290--Hb_004093_090 Hb_000638_290--Hb_012016_010 Hb_000638_290--Hb_000866_410 Hb_000638_290--Hb_029142_060 Hb_000610_010 Hb_000610_010 Hb_000009_530--Hb_000610_010 Hb_000286_070 Hb_000286_070 Hb_000009_530--Hb_000286_070 Hb_003687_230 Hb_003687_230 Hb_000009_530--Hb_003687_230 Hb_000009_530--Hb_004093_090 Hb_000144_100 Hb_000144_100 Hb_000009_530--Hb_000144_100 Hb_003292_040 Hb_003292_040 Hb_000009_530--Hb_003292_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.8546 23.378 32.3653 13.5024 21.0293 22.9682
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.3496 35.0386 17.023 12.4956 12.9612

CAGE analysis