Hb_001898_240

Information

Type -
Description -
Location Contig1898: 224598-227408
Sequence    

Annotation

kegg
ID rcu:RCOM_0758180
description hypothetical protein
nr
ID XP_012459023.1
description PREDICTED: uncharacterized protein LOC105779688 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2W067
description Gossypium raimondii chromosome 12, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_012G169900 PE=4 SV=1
Gene Ontology
ID GO:0009507
description PREDICTED: uncharacterized protein LOC105779688

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18857: 224635-227309 , PASA_asmbl_18858: 225946-227378
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001898_240 0.0 - - PREDICTED: uncharacterized protein LOC105779688 [Gossypium raimondii]
2 Hb_006261_090 0.0761850405 - - PREDICTED: exosome complex exonuclease RRP46 homolog [Jatropha curcas]
3 Hb_001864_070 0.0790812803 - - PREDICTED: probable histone H2A.3 [Jatropha curcas]
4 Hb_000009_530 0.0814112844 - - PREDICTED: uncharacterized protein LOC105639628 [Jatropha curcas]
5 Hb_002228_110 0.0848616774 - - cytochrome b5 isoform Cb5-B [Vernicia fordii]
6 Hb_000610_010 0.0852129522 - - PREDICTED: SKP1-like protein 1B [Musa acuminata subsp. malaccensis]
7 Hb_003621_020 0.0874398926 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
8 Hb_000144_100 0.0884178381 - - PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial [Jatropha curcas]
9 Hb_002553_040 0.098049299 - - PREDICTED: transcription factor bHLH104 [Jatropha curcas]
10 Hb_004785_190 0.0990136454 - - PHD finger family protein [Populus trichocarpa]
11 Hb_153553_030 0.0994387666 - - PREDICTED: zinc finger protein GIS2 [Jatropha curcas]
12 Hb_001195_260 0.099672832 - - Mitochondrial 50S ribosomal protein L27 [Hevea brasiliensis]
13 Hb_000220_040 0.1058620591 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004648_090 0.1077559006 - - peroxisomal biogenesis factor, putative [Ricinus communis]
15 Hb_021576_040 0.1078725351 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002296_050 0.1079726904 - - hypothetical protein AMTR_s00001p00247600 [Amborella trichopoda]
17 Hb_058972_010 0.109836972 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
18 Hb_001586_040 0.1119673578 - - hypothetical protein JCGZ_17187 [Jatropha curcas]
19 Hb_000163_240 0.1120304129 - - PREDICTED: protein OPI10 homolog [Jatropha curcas]
20 Hb_073973_130 0.1128321736 - - PREDICTED: prolyl-tRNA synthetase associated domain-containing protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001898_240 Hb_001898_240 Hb_006261_090 Hb_006261_090 Hb_001898_240--Hb_006261_090 Hb_001864_070 Hb_001864_070 Hb_001898_240--Hb_001864_070 Hb_000009_530 Hb_000009_530 Hb_001898_240--Hb_000009_530 Hb_002228_110 Hb_002228_110 Hb_001898_240--Hb_002228_110 Hb_000610_010 Hb_000610_010 Hb_001898_240--Hb_000610_010 Hb_003621_020 Hb_003621_020 Hb_001898_240--Hb_003621_020 Hb_006261_090--Hb_002228_110 Hb_000329_590 Hb_000329_590 Hb_006261_090--Hb_000329_590 Hb_004648_090 Hb_004648_090 Hb_006261_090--Hb_004648_090 Hb_004128_200 Hb_004128_200 Hb_006261_090--Hb_004128_200 Hb_001671_040 Hb_001671_040 Hb_006261_090--Hb_001671_040 Hb_002217_110 Hb_002217_110 Hb_001864_070--Hb_002217_110 Hb_001699_210 Hb_001699_210 Hb_001864_070--Hb_001699_210 Hb_002553_040 Hb_002553_040 Hb_001864_070--Hb_002553_040 Hb_008225_090 Hb_008225_090 Hb_001864_070--Hb_008225_090 Hb_000010_110 Hb_000010_110 Hb_001864_070--Hb_000010_110 Hb_000009_530--Hb_000610_010 Hb_000286_070 Hb_000286_070 Hb_000009_530--Hb_000286_070 Hb_003687_230 Hb_003687_230 Hb_000009_530--Hb_003687_230 Hb_004093_090 Hb_004093_090 Hb_000009_530--Hb_004093_090 Hb_000144_100 Hb_000144_100 Hb_000009_530--Hb_000144_100 Hb_003292_040 Hb_003292_040 Hb_000009_530--Hb_003292_040 Hb_002228_110--Hb_004648_090 Hb_003682_030 Hb_003682_030 Hb_002228_110--Hb_003682_030 Hb_002228_110--Hb_001671_040 Hb_001225_030 Hb_001225_030 Hb_002228_110--Hb_001225_030 Hb_000610_010--Hb_004093_090 Hb_000610_010--Hb_003687_230 Hb_000107_190 Hb_000107_190 Hb_000610_010--Hb_000107_190 Hb_073973_130 Hb_073973_130 Hb_000610_010--Hb_073973_130 Hb_000610_010--Hb_003292_040 Hb_153553_030 Hb_153553_030 Hb_003621_020--Hb_153553_030 Hb_003621_020--Hb_000009_530 Hb_000638_290 Hb_000638_290 Hb_003621_020--Hb_000638_290 Hb_012016_010 Hb_012016_010 Hb_003621_020--Hb_012016_010 Hb_180424_010 Hb_180424_010 Hb_003621_020--Hb_180424_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.3755 35.0537 46.7472 21.0992 38.9839 24.4194
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.7654 41.011 14.0546 9.94566 13.2361

CAGE analysis