Hb_006261_090

Information

Type -
Description -
Location Contig6261: 104828-110075
Sequence    

Annotation

kegg
ID pop:POPTR_0018s00300g
description POPTRDRAFT_912668; hypothetical protein
nr
ID XP_012089928.1
description PREDICTED: exosome complex exonuclease RRP46 homolog [Jatropha curcas]
swissprot
ID Q84T68
description Exosome complex exonuclease RRP46 homolog OS=Oryza sativa subsp. japonica GN=RRP46 PE=1 SV=2
trembl
ID A0A067JFJ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02513 PE=4 SV=1
Gene Ontology
ID GO:0005840
description exosome complex exonuclease rrp46 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51674: 104701-109942 , PASA_asmbl_51675: 104701-110007
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006261_090 0.0 - - PREDICTED: exosome complex exonuclease RRP46 homolog [Jatropha curcas]
2 Hb_001898_240 0.0761850405 - - PREDICTED: uncharacterized protein LOC105779688 [Gossypium raimondii]
3 Hb_002228_110 0.0924529283 - - cytochrome b5 isoform Cb5-B [Vernicia fordii]
4 Hb_000329_590 0.1026582966 - - catalytic, putative [Ricinus communis]
5 Hb_004648_090 0.1050645085 - - peroxisomal biogenesis factor, putative [Ricinus communis]
6 Hb_004128_200 0.1072563855 - - PREDICTED: uncharacterized protein LOC105642137 [Jatropha curcas]
7 Hb_001671_040 0.1072928338 - - PREDICTED: serine/arginine-rich splicing factor RS31-like isoform X1 [Populus euphratica]
8 Hb_002553_040 0.1073336046 - - PREDICTED: transcription factor bHLH104 [Jatropha curcas]
9 Hb_005389_100 0.1105331646 - - PREDICTED: methyltransferase-like protein 5 isoform X2 [Jatropha curcas]
10 Hb_058972_010 0.1108152479 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
11 Hb_005355_030 0.1122453362 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
12 Hb_000009_530 0.1129422283 - - PREDICTED: uncharacterized protein LOC105639628 [Jatropha curcas]
13 Hb_000610_010 0.113840907 - - PREDICTED: SKP1-like protein 1B [Musa acuminata subsp. malaccensis]
14 Hb_000576_020 0.1157802654 - - PREDICTED: uncharacterized protein LOC105638286 [Jatropha curcas]
15 Hb_001864_070 0.1185859111 - - PREDICTED: probable histone H2A.3 [Jatropha curcas]
16 Hb_000107_190 0.119152237 - - 50S ribosomal protein L20 [Hevea brasiliensis]
17 Hb_073973_130 0.1192251886 - - PREDICTED: prolyl-tRNA synthetase associated domain-containing protein 1 [Jatropha curcas]
18 Hb_000035_250 0.1201606067 - - PREDICTED: uncharacterized protein LOC105637544 [Jatropha curcas]
19 Hb_000059_340 0.1202471062 transcription factor TF Family: SOH1 uncharacterized protein LOC100527879 [Glycine max]
20 Hb_004122_040 0.1203485736 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_006261_090 Hb_006261_090 Hb_001898_240 Hb_001898_240 Hb_006261_090--Hb_001898_240 Hb_002228_110 Hb_002228_110 Hb_006261_090--Hb_002228_110 Hb_000329_590 Hb_000329_590 Hb_006261_090--Hb_000329_590 Hb_004648_090 Hb_004648_090 Hb_006261_090--Hb_004648_090 Hb_004128_200 Hb_004128_200 Hb_006261_090--Hb_004128_200 Hb_001671_040 Hb_001671_040 Hb_006261_090--Hb_001671_040 Hb_001864_070 Hb_001864_070 Hb_001898_240--Hb_001864_070 Hb_000009_530 Hb_000009_530 Hb_001898_240--Hb_000009_530 Hb_001898_240--Hb_002228_110 Hb_000610_010 Hb_000610_010 Hb_001898_240--Hb_000610_010 Hb_003621_020 Hb_003621_020 Hb_001898_240--Hb_003621_020 Hb_002228_110--Hb_004648_090 Hb_003682_030 Hb_003682_030 Hb_002228_110--Hb_003682_030 Hb_002228_110--Hb_001671_040 Hb_001225_030 Hb_001225_030 Hb_002228_110--Hb_001225_030 Hb_002067_030 Hb_002067_030 Hb_000329_590--Hb_002067_030 Hb_005389_100 Hb_005389_100 Hb_000329_590--Hb_005389_100 Hb_154580_010 Hb_154580_010 Hb_000329_590--Hb_154580_010 Hb_000260_680 Hb_000260_680 Hb_000329_590--Hb_000260_680 Hb_005355_030 Hb_005355_030 Hb_000329_590--Hb_005355_030 Hb_009659_050 Hb_009659_050 Hb_000329_590--Hb_009659_050 Hb_004870_050 Hb_004870_050 Hb_004648_090--Hb_004870_050 Hb_002110_160 Hb_002110_160 Hb_004648_090--Hb_002110_160 Hb_004648_090--Hb_005389_100 Hb_010998_040 Hb_010998_040 Hb_004648_090--Hb_010998_040 Hb_004648_090--Hb_001671_040 Hb_003579_050 Hb_003579_050 Hb_004128_200--Hb_003579_050 Hb_011249_030 Hb_011249_030 Hb_004128_200--Hb_011249_030 Hb_027073_030 Hb_027073_030 Hb_004128_200--Hb_027073_030 Hb_001005_020 Hb_001005_020 Hb_004128_200--Hb_001005_020 Hb_001277_280 Hb_001277_280 Hb_004128_200--Hb_001277_280 Hb_039605_010 Hb_039605_010 Hb_004128_200--Hb_039605_010 Hb_000035_250 Hb_000035_250 Hb_001671_040--Hb_000035_250 Hb_001953_070 Hb_001953_070 Hb_001671_040--Hb_001953_070 Hb_006615_050 Hb_006615_050 Hb_001671_040--Hb_006615_050 Hb_008225_090 Hb_008225_090 Hb_001671_040--Hb_008225_090 Hb_000010_110 Hb_000010_110 Hb_001671_040--Hb_000010_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.5096 42.4404 60.0483 22.8619 40.6134 22.9399
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.0479 40.3413 10.8095 17.5742 10.5209

CAGE analysis