Hb_002228_110

Information

Type -
Description -
Location Contig2228: 92468-96405
Sequence    

Annotation

kegg
ID cit:102615697
description cytochrome b5 isoform B-like
nr
ID AAT84459.1
description cytochrome b5 isoform Cb5-B [Vernicia fordii]
swissprot
ID P49098
description Cytochrome b5 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID Q5V9L3
description Cytochrome b5 isoform Cb5-B OS=Vernicia fordii PE=2 SV=1
Gene Ontology
ID GO:0005789
description cytochrome b5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23071: 85237-91516 , PASA_asmbl_23073: 95005-95552 , PASA_asmbl_23074: 92629-96339 , PASA_asmbl_23075: 92820-96332
cDNA
(Sanger)
(ID:Location)		 002_M22.ab1: 92820-96332

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002228_110 0.0 - - cytochrome b5 isoform Cb5-B [Vernicia fordii]
2 Hb_004648_090 0.0792827119 - - peroxisomal biogenesis factor, putative [Ricinus communis]
3 Hb_001898_240 0.0848616774 - - PREDICTED: uncharacterized protein LOC105779688 [Gossypium raimondii]
4 Hb_003682_030 0.0858658528 - - hypothetical protein CICLE_v10020876mg [Citrus clementina]
5 Hb_006261_090 0.0924529283 - - PREDICTED: exosome complex exonuclease RRP46 homolog [Jatropha curcas]
6 Hb_001671_040 0.1006743743 - - PREDICTED: serine/arginine-rich splicing factor RS31-like isoform X1 [Populus euphratica]
7 Hb_001225_030 0.1008535139 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 1 [Jatropha curcas]
8 Hb_005389_100 0.1020556967 - - PREDICTED: methyltransferase-like protein 5 isoform X2 [Jatropha curcas]
9 Hb_000375_290 0.1033074316 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
10 Hb_004870_050 0.1040306701 - - PREDICTED: ATP-dependent RNA helicase DBP3 [Jatropha curcas]
11 Hb_000525_100 0.1041957698 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
12 Hb_000329_590 0.1045412935 - - catalytic, putative [Ricinus communis]
13 Hb_009270_040 0.1064388093 - - -
14 Hb_000081_010 0.1091063984 - - hypothetical protein B456_012G056000 [Gossypium raimondii]
15 Hb_003621_020 0.1104099567 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
16 Hb_010998_040 0.1111560397 transcription factor TF Family: MYB myb3r3, putative [Ricinus communis]
17 Hb_004128_200 0.1147143363 - - PREDICTED: uncharacterized protein LOC105642137 [Jatropha curcas]
18 Hb_002553_040 0.1148806581 - - PREDICTED: transcription factor bHLH104 [Jatropha curcas]
19 Hb_000139_190 0.1179395366 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform X2 [Jatropha curcas]
20 Hb_000002_240 0.1187372758 - - PREDICTED: transcription factor bHLH104 [Jatropha curcas]

Gene co-expression network

sample Hb_002228_110 Hb_002228_110 Hb_004648_090 Hb_004648_090 Hb_002228_110--Hb_004648_090 Hb_001898_240 Hb_001898_240 Hb_002228_110--Hb_001898_240 Hb_003682_030 Hb_003682_030 Hb_002228_110--Hb_003682_030 Hb_006261_090 Hb_006261_090 Hb_002228_110--Hb_006261_090 Hb_001671_040 Hb_001671_040 Hb_002228_110--Hb_001671_040 Hb_001225_030 Hb_001225_030 Hb_002228_110--Hb_001225_030 Hb_004870_050 Hb_004870_050 Hb_004648_090--Hb_004870_050 Hb_002110_160 Hb_002110_160 Hb_004648_090--Hb_002110_160 Hb_005389_100 Hb_005389_100 Hb_004648_090--Hb_005389_100 Hb_010998_040 Hb_010998_040 Hb_004648_090--Hb_010998_040 Hb_004648_090--Hb_001671_040 Hb_001898_240--Hb_006261_090 Hb_001864_070 Hb_001864_070 Hb_001898_240--Hb_001864_070 Hb_000009_530 Hb_000009_530 Hb_001898_240--Hb_000009_530 Hb_000610_010 Hb_000610_010 Hb_001898_240--Hb_000610_010 Hb_003621_020 Hb_003621_020 Hb_001898_240--Hb_003621_020 Hb_003682_030--Hb_001225_030 Hb_008695_090 Hb_008695_090 Hb_003682_030--Hb_008695_090 Hb_000723_110 Hb_000723_110 Hb_003682_030--Hb_000723_110 Hb_005306_160 Hb_005306_160 Hb_003682_030--Hb_005306_160 Hb_003682_030--Hb_004870_050 Hb_000094_090 Hb_000094_090 Hb_003682_030--Hb_000094_090 Hb_000329_590 Hb_000329_590 Hb_006261_090--Hb_000329_590 Hb_006261_090--Hb_004648_090 Hb_004128_200 Hb_004128_200 Hb_006261_090--Hb_004128_200 Hb_006261_090--Hb_001671_040 Hb_000035_250 Hb_000035_250 Hb_001671_040--Hb_000035_250 Hb_001953_070 Hb_001953_070 Hb_001671_040--Hb_001953_070 Hb_006615_050 Hb_006615_050 Hb_001671_040--Hb_006615_050 Hb_008225_090 Hb_008225_090 Hb_001671_040--Hb_008225_090 Hb_000010_110 Hb_000010_110 Hb_001671_040--Hb_000010_110 Hb_000375_290 Hb_000375_290 Hb_001225_030--Hb_000375_290 Hb_000645_170 Hb_000645_170 Hb_001225_030--Hb_000645_170 Hb_001225_030--Hb_004870_050 Hb_001225_030--Hb_000094_090 Hb_001754_030 Hb_001754_030 Hb_001225_030--Hb_001754_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
88.9579 148.447 155.689 65.587 86.9099 80.635
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
60.2909 101.599 36.2904 32.1402 43.9263

CAGE analysis