Hb_000329_590

Information

Type -
Description -
Location Contig329: 459480-463623
Sequence    

Annotation

kegg
ID rcu:RCOM_1609370
description catalytic, putative (EC:4.2.1.17)
nr
ID XP_002511633.1
description catalytic, putative [Ricinus communis]
swissprot
ID Q8RXN4
description 3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial OS=Arabidopsis thaliana GN=At4g31810 PE=2 SV=1
trembl
ID B9RD44
description Catalytic, putative OS=Ricinus communis GN=RCOM_1609370 PE=4 SV=1
Gene Ontology
ID GO:0003860
description 3-hydroxyisobutyryl- hydrolase-like protein mitochondrial isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34567: 459978-463447 , PASA_asmbl_34568: 460957-461114 , PASA_asmbl_34569: 461115-461370
cDNA
(Sanger)
(ID:Location)		 019_O03.ab1: 462898-463444

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_590 0.0 - - catalytic, putative [Ricinus communis]
2 Hb_002067_030 0.0696320263 - - PREDICTED: poly(ADP-ribose) glycohydrolase 1-like isoform X2 [Jatropha curcas]
3 Hb_005389_100 0.0731110862 - - PREDICTED: methyltransferase-like protein 5 isoform X2 [Jatropha curcas]
4 Hb_154580_010 0.0746759223 - - hypothetical protein PRUPE_ppa002109mg [Prunus persica]
5 Hb_000260_680 0.0799513278 - - PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2-A [Jatropha curcas]
6 Hb_005355_030 0.0833929367 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
7 Hb_009659_050 0.0839039493 - - PREDICTED: putative hydrolase C777.06c isoform X2 [Jatropha curcas]
8 Hb_001636_050 0.0872825498 transcription factor TF Family: NF-X1 nuclear transcription factor, X-box binding, putative [Ricinus communis]
9 Hb_000645_170 0.0881433161 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000160_350 0.0883012776 - - PREDICTED: double-stranded RNA-binding protein 4 isoform X3 [Vitis vinifera]
11 Hb_026980_020 0.0896553337 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]
12 Hb_003096_060 0.0903330629 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
13 Hb_032202_120 0.0907824593 - - PREDICTED: uncharacterized protein LOC105643059 isoform X2 [Jatropha curcas]
14 Hb_000679_340 0.0916352141 - - PREDICTED: uncharacterized protein LOC105650070 isoform X1 [Jatropha curcas]
15 Hb_012753_170 0.0954750196 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like isoform X2 [Jatropha curcas]
16 Hb_000098_140 0.0977933917 - - hypothetical protein JCGZ_04989 [Jatropha curcas]
17 Hb_002217_110 0.0987880016 - - PREDICTED: craniofacial development protein 1 [Jatropha curcas]
18 Hb_002701_150 0.0995099408 - - PREDICTED: probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 isoform X2 [Jatropha curcas]
19 Hb_003927_040 0.0995520509 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
20 Hb_008568_020 0.1005703217 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]

Gene co-expression network

sample Hb_000329_590 Hb_000329_590 Hb_002067_030 Hb_002067_030 Hb_000329_590--Hb_002067_030 Hb_005389_100 Hb_005389_100 Hb_000329_590--Hb_005389_100 Hb_154580_010 Hb_154580_010 Hb_000329_590--Hb_154580_010 Hb_000260_680 Hb_000260_680 Hb_000329_590--Hb_000260_680 Hb_005355_030 Hb_005355_030 Hb_000329_590--Hb_005355_030 Hb_009659_050 Hb_009659_050 Hb_000329_590--Hb_009659_050 Hb_000098_140 Hb_000098_140 Hb_002067_030--Hb_000098_140 Hb_002067_030--Hb_154580_010 Hb_001636_050 Hb_001636_050 Hb_002067_030--Hb_001636_050 Hb_002067_030--Hb_000260_680 Hb_013394_030 Hb_013394_030 Hb_002067_030--Hb_013394_030 Hb_004648_090 Hb_004648_090 Hb_005389_100--Hb_004648_090 Hb_005389_100--Hb_000098_140 Hb_005389_100--Hb_002067_030 Hb_001671_040 Hb_001671_040 Hb_005389_100--Hb_001671_040 Hb_000525_100 Hb_000525_100 Hb_005389_100--Hb_000525_100 Hb_008568_020 Hb_008568_020 Hb_154580_010--Hb_008568_020 Hb_003096_060 Hb_003096_060 Hb_154580_010--Hb_003096_060 Hb_000645_170 Hb_000645_170 Hb_154580_010--Hb_000645_170 Hb_005289_040 Hb_005289_040 Hb_154580_010--Hb_005289_040 Hb_026980_020 Hb_026980_020 Hb_154580_010--Hb_026980_020 Hb_001776_060 Hb_001776_060 Hb_000260_680--Hb_001776_060 Hb_000331_110 Hb_000331_110 Hb_000260_680--Hb_000331_110 Hb_002217_110 Hb_002217_110 Hb_000260_680--Hb_002217_110 Hb_079526_030 Hb_079526_030 Hb_000260_680--Hb_079526_030 Hb_001153_210 Hb_001153_210 Hb_000260_680--Hb_001153_210 Hb_005779_010 Hb_005779_010 Hb_000260_680--Hb_005779_010 Hb_000576_020 Hb_000576_020 Hb_005355_030--Hb_000576_020 Hb_000282_030 Hb_000282_030 Hb_005355_030--Hb_000282_030 Hb_002078_220 Hb_002078_220 Hb_005355_030--Hb_002078_220 Hb_002325_040 Hb_002325_040 Hb_005355_030--Hb_002325_040 Hb_006916_040 Hb_006916_040 Hb_005355_030--Hb_006916_040 Hb_009659_050--Hb_002217_110 Hb_001227_030 Hb_001227_030 Hb_009659_050--Hb_001227_030 Hb_004837_180 Hb_004837_180 Hb_009659_050--Hb_004837_180 Hb_009659_050--Hb_000260_680 Hb_004236_050 Hb_004236_050 Hb_009659_050--Hb_004236_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.20594 10.7942 11.823 4.6905 8.77029 7.14529
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.9918 7.56278 2.13721 6.22763 5.08328

CAGE analysis