Hb_000282_030

Information

Type -
Description -
Location Contig282: 84785-102187
Sequence    

Annotation

kegg
ID rcu:RCOM_1047770
description Inner membrane protein ybaL, putative
nr
ID KHM99845.1
description K(+) efflux antiporter 4 [Glycine soja]
swissprot
ID Q9ZUN3
description K(+) efflux antiporter 4 OS=Arabidopsis thaliana GN=KEA4 PE=2 SV=2
trembl
ID I1K640
description Uncharacterized protein OS=Glycine max PE=4 SV=2
Gene Ontology
ID GO:0016021
description k(+) efflux antiporter 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29513: 87016-87221 , PASA_asmbl_29514: 93231-93542
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000282_030 0.0 - - K(+) efflux antiporter 4 [Glycine soja]
2 Hb_118026_010 0.0829768163 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 11 [Jatropha curcas]
3 Hb_005355_030 0.0845064404 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
4 Hb_006916_040 0.0845281788 - - 60S ribosomal protein L7a, putative [Ricinus communis]
5 Hb_000076_160 0.0934255201 - - PREDICTED: AP-5 complex subunit zeta-1 [Jatropha curcas]
6 Hb_001205_200 0.0966518073 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002272_020 0.0979941724 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
8 Hb_002078_220 0.0997214773 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X1 [Jatropha curcas]
9 Hb_000358_230 0.1017189577 - - protein phosphatases pp1 regulatory subunit, putative [Ricinus communis]
10 Hb_005306_160 0.1031157583 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1-like [Jatropha curcas]
11 Hb_004631_180 0.1047279484 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
12 Hb_000576_020 0.1051802386 - - PREDICTED: uncharacterized protein LOC105638286 [Jatropha curcas]
13 Hb_003096_060 0.1052797518 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
14 Hb_056987_010 0.1092685885 - - DNA-damage-repair/toleration protein DRT111, chloroplastic [Glycine soja]
15 Hb_002325_040 0.1105274651 - - PREDICTED: uncharacterized protein LOC105645422 isoform X1 [Jatropha curcas]
16 Hb_009545_090 0.1123777752 - - hypothetical protein JCGZ_02186 [Jatropha curcas]
17 Hb_003682_030 0.1126177831 - - hypothetical protein CICLE_v10020876mg [Citrus clementina]
18 Hb_000487_210 0.1136315284 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
19 Hb_000211_120 0.114424353 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
20 Hb_001258_100 0.1151629613 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000282_030 Hb_000282_030 Hb_118026_010 Hb_118026_010 Hb_000282_030--Hb_118026_010 Hb_005355_030 Hb_005355_030 Hb_000282_030--Hb_005355_030 Hb_006916_040 Hb_006916_040 Hb_000282_030--Hb_006916_040 Hb_000076_160 Hb_000076_160 Hb_000282_030--Hb_000076_160 Hb_001205_200 Hb_001205_200 Hb_000282_030--Hb_001205_200 Hb_002272_020 Hb_002272_020 Hb_000282_030--Hb_002272_020 Hb_118026_010--Hb_001205_200 Hb_000357_110 Hb_000357_110 Hb_118026_010--Hb_000357_110 Hb_118026_010--Hb_006916_040 Hb_118026_010--Hb_000076_160 Hb_002078_220 Hb_002078_220 Hb_118026_010--Hb_002078_220 Hb_000576_020 Hb_000576_020 Hb_005355_030--Hb_000576_020 Hb_000329_590 Hb_000329_590 Hb_005355_030--Hb_000329_590 Hb_005355_030--Hb_002078_220 Hb_002325_040 Hb_002325_040 Hb_005355_030--Hb_002325_040 Hb_005355_030--Hb_006916_040 Hb_004631_180 Hb_004631_180 Hb_006916_040--Hb_004631_180 Hb_006916_040--Hb_000576_020 Hb_000256_190 Hb_000256_190 Hb_006916_040--Hb_000256_190 Hb_001051_080 Hb_001051_080 Hb_006916_040--Hb_001051_080 Hb_006916_040--Hb_000076_160 Hb_033834_030 Hb_033834_030 Hb_006916_040--Hb_033834_030 Hb_005306_160 Hb_005306_160 Hb_000076_160--Hb_005306_160 Hb_000928_220 Hb_000928_220 Hb_000076_160--Hb_000928_220 Hb_000679_310 Hb_000679_310 Hb_000076_160--Hb_000679_310 Hb_000358_230 Hb_000358_230 Hb_000076_160--Hb_000358_230 Hb_000087_060 Hb_000087_060 Hb_000076_160--Hb_000087_060 Hb_001751_140 Hb_001751_140 Hb_000076_160--Hb_001751_140 Hb_001205_200--Hb_000087_060 Hb_004143_100 Hb_004143_100 Hb_001205_200--Hb_004143_100 Hb_001205_200--Hb_000076_160 Hb_000402_230 Hb_000402_230 Hb_001205_200--Hb_000402_230 Hb_001205_200--Hb_000358_230 Hb_003866_080 Hb_003866_080 Hb_001205_200--Hb_003866_080 Hb_111198_010 Hb_111198_010 Hb_002272_020--Hb_111198_010 Hb_002272_020--Hb_000076_160 Hb_003299_030 Hb_003299_030 Hb_002272_020--Hb_003299_030 Hb_002272_020--Hb_002078_220 Hb_003117_020 Hb_003117_020 Hb_002272_020--Hb_003117_020 Hb_001946_040 Hb_001946_040 Hb_002272_020--Hb_001946_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.40983 2.31378 1.48553 1.57259 1.29948 1.3429
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.03559 1.29175 0.450922 0.941825 0.334933

CAGE analysis