Hb_001946_040

Information

Type -
Description -
Location Contig1946: 29484-33359
Sequence    

Annotation

kegg
ID rcu:RCOM_0224350
description hypothetical protein
nr
ID XP_002524505.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SET6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0224350 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19386: 29517-33011
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001946_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_031527_020 0.0719854765 - - PREDICTED: pre-mRNA-splicing factor 38B isoform X1 [Jatropha curcas]
3 Hb_000336_250 0.0728967387 transcription factor TF Family: mTERF hypothetical protein B456_002G027700 [Gossypium raimondii]
4 Hb_000309_040 0.0736948401 - - PREDICTED: protein farnesyltransferase subunit beta isoform X1 [Jatropha curcas]
5 Hb_001247_130 0.0760093938 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
6 Hb_003371_150 0.0767567004 - - PREDICTED: serine/threonine-protein kinase 10 [Jatropha curcas]
7 Hb_004055_150 0.0803445285 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003609_030 0.0814238683 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
9 Hb_000214_040 0.0826571921 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003052_140 0.082843972 - - s-adenosylmethionine decarboxylase, putative [Ricinus communis]
11 Hb_001728_050 0.0830949144 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Jatropha curcas]
12 Hb_008511_030 0.0851845757 - - guanine nucleotide-binding protein beta, putative [Ricinus communis]
13 Hb_057878_010 0.0854913722 - - hypothetical protein VITISV_036304 [Vitis vinifera]
14 Hb_005993_050 0.085791563 - - Protein AFR, putative [Ricinus communis]
15 Hb_002272_020 0.0864880924 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
16 Hb_001751_140 0.086718689 - - PREDICTED: uncharacterized protein LOC105648510 isoform X1 [Jatropha curcas]
17 Hb_111198_010 0.086804905 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
18 Hb_006960_050 0.0880977518 - - PREDICTED: PRKR-interacting protein 1 [Jatropha curcas]
19 Hb_032208_040 0.08861386 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL33 [Populus euphratica]
20 Hb_000207_130 0.0896231169 - - PREDICTED: calcium-dependent protein kinase 11 [Jatropha curcas]

Gene co-expression network

sample Hb_001946_040 Hb_001946_040 Hb_031527_020 Hb_031527_020 Hb_001946_040--Hb_031527_020 Hb_000336_250 Hb_000336_250 Hb_001946_040--Hb_000336_250 Hb_000309_040 Hb_000309_040 Hb_001946_040--Hb_000309_040 Hb_001247_130 Hb_001247_130 Hb_001946_040--Hb_001247_130 Hb_003371_150 Hb_003371_150 Hb_001946_040--Hb_003371_150 Hb_004055_150 Hb_004055_150 Hb_001946_040--Hb_004055_150 Hb_005489_080 Hb_005489_080 Hb_031527_020--Hb_005489_080 Hb_003785_040 Hb_003785_040 Hb_031527_020--Hb_003785_040 Hb_111198_010 Hb_111198_010 Hb_031527_020--Hb_111198_010 Hb_003609_030 Hb_003609_030 Hb_031527_020--Hb_003609_030 Hb_000732_120 Hb_000732_120 Hb_031527_020--Hb_000732_120 Hb_031527_020--Hb_000336_250 Hb_003052_140 Hb_003052_140 Hb_000336_250--Hb_003052_140 Hb_000336_250--Hb_003609_030 Hb_000479_220 Hb_000479_220 Hb_000336_250--Hb_000479_220 Hb_007416_180 Hb_007416_180 Hb_000336_250--Hb_007416_180 Hb_002078_110 Hb_002078_110 Hb_000309_040--Hb_002078_110 Hb_001051_080 Hb_001051_080 Hb_000309_040--Hb_001051_080 Hb_000076_160 Hb_000076_160 Hb_000309_040--Hb_000076_160 Hb_001751_140 Hb_001751_140 Hb_000309_040--Hb_001751_140 Hb_138596_010 Hb_138596_010 Hb_000309_040--Hb_138596_010 Hb_002835_230 Hb_002835_230 Hb_000309_040--Hb_002835_230 Hb_032208_040 Hb_032208_040 Hb_001247_130--Hb_032208_040 Hb_005137_050 Hb_005137_050 Hb_001247_130--Hb_005137_050 Hb_001728_050 Hb_001728_050 Hb_001247_130--Hb_001728_050 Hb_004357_020 Hb_004357_020 Hb_001247_130--Hb_004357_020 Hb_000130_240 Hb_000130_240 Hb_001247_130--Hb_000130_240 Hb_000959_270 Hb_000959_270 Hb_003371_150--Hb_000959_270 Hb_000610_010 Hb_000610_010 Hb_003371_150--Hb_000610_010 Hb_004093_090 Hb_004093_090 Hb_003371_150--Hb_004093_090 Hb_003581_070 Hb_003581_070 Hb_003371_150--Hb_003581_070 Hb_036790_100 Hb_036790_100 Hb_003371_150--Hb_036790_100 Hb_001926_030 Hb_001926_030 Hb_004055_150--Hb_001926_030 Hb_002686_250 Hb_002686_250 Hb_004055_150--Hb_002686_250 Hb_000853_230 Hb_000853_230 Hb_004055_150--Hb_000853_230 Hb_006620_020 Hb_006620_020 Hb_004055_150--Hb_006620_020 Hb_006960_050 Hb_006960_050 Hb_004055_150--Hb_006960_050 Hb_005993_050 Hb_005993_050 Hb_004055_150--Hb_005993_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
63.0842 43.541 31.6523 29.7179 38.981 37.1707
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.0356 32.5309 26.43 20.6655 17.9925

CAGE analysis