Hb_003581_070

Information

Type -
Description -
Location Contig3581: 53659-55290
Sequence    

Annotation

kegg
ID mdm:103451875
description putative pentatricopeptide repeat-containing protein At5g40405
nr
ID XP_008389535.1
description PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Malus domestica]
swissprot
ID Q9FND7
description Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1
trembl
ID M5XCT1
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003120mg PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at5g40405

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003581_070 0.0 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Malus domestica]
2 Hb_002813_040 0.0743959753 - - PREDICTED: PRA1 family protein G2 [Jatropha curcas]
3 Hb_003052_140 0.0841308621 - - s-adenosylmethionine decarboxylase, putative [Ricinus communis]
4 Hb_004228_030 0.0882904907 - - unnamed protein product [Coffea canephora]
5 Hb_002256_030 0.0901705938 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000125_170 0.090340136 transcription factor TF Family: mTERF hypothetical protein VITISV_028994 [Vitis vinifera]
7 Hb_003371_150 0.0923216672 - - PREDICTED: serine/threonine-protein kinase 10 [Jatropha curcas]
8 Hb_005675_040 0.0929189986 transcription factor TF Family: ERF unnamed protein product [Vitis vinifera]
9 Hb_001488_070 0.0964246478 - - conserved hypothetical protein [Ricinus communis]
10 Hb_036790_100 0.0969318324 - - PREDICTED: uncharacterized protein LOC105645120 [Jatropha curcas]
11 Hb_000120_330 0.1027986323 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005541_010 0.1030947771 - - PREDICTED: uncharacterized protein LOC105629250 [Jatropha curcas]
13 Hb_002740_030 0.1033023243 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
14 Hb_000179_070 0.1043938808 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
15 Hb_000181_070 0.1055368513 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_035398_020 0.1062552987 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
17 Hb_004586_140 0.1065635513 - - PREDICTED: uncharacterized protein LOC105630689 [Jatropha curcas]
18 Hb_004032_360 0.1072603258 - - PREDICTED: uncharacterized protein LOC103403885 [Malus domestica]
19 Hb_140506_010 0.1081705725 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like [Jatropha curcas]
20 Hb_000099_080 0.108843408 - - kinesin light chain, putative [Ricinus communis]

Gene co-expression network

sample Hb_003581_070 Hb_003581_070 Hb_002813_040 Hb_002813_040 Hb_003581_070--Hb_002813_040 Hb_003052_140 Hb_003052_140 Hb_003581_070--Hb_003052_140 Hb_004228_030 Hb_004228_030 Hb_003581_070--Hb_004228_030 Hb_002256_030 Hb_002256_030 Hb_003581_070--Hb_002256_030 Hb_000125_170 Hb_000125_170 Hb_003581_070--Hb_000125_170 Hb_003371_150 Hb_003371_150 Hb_003581_070--Hb_003371_150 Hb_001488_070 Hb_001488_070 Hb_002813_040--Hb_001488_070 Hb_029866_090 Hb_029866_090 Hb_002813_040--Hb_029866_090 Hb_031527_040 Hb_031527_040 Hb_002813_040--Hb_031527_040 Hb_002813_040--Hb_002256_030 Hb_020956_020 Hb_020956_020 Hb_002813_040--Hb_020956_020 Hb_000336_250 Hb_000336_250 Hb_003052_140--Hb_000336_250 Hb_003052_140--Hb_000125_170 Hb_005675_040 Hb_005675_040 Hb_003052_140--Hb_005675_040 Hb_005016_160 Hb_005016_160 Hb_003052_140--Hb_005016_160 Hb_007416_180 Hb_007416_180 Hb_003052_140--Hb_007416_180 Hb_005541_010 Hb_005541_010 Hb_003052_140--Hb_005541_010 Hb_004228_030--Hb_005675_040 Hb_000373_150 Hb_000373_150 Hb_004228_030--Hb_000373_150 Hb_004228_030--Hb_000125_170 Hb_000130_240 Hb_000130_240 Hb_004228_030--Hb_000130_240 Hb_005207_050 Hb_005207_050 Hb_004228_030--Hb_005207_050 Hb_036790_100 Hb_036790_100 Hb_002256_030--Hb_036790_100 Hb_002256_030--Hb_031527_040 Hb_004032_360 Hb_004032_360 Hb_002256_030--Hb_004032_360 Hb_001552_020 Hb_001552_020 Hb_002256_030--Hb_001552_020 Hb_001242_060 Hb_001242_060 Hb_002256_030--Hb_001242_060 Hb_002739_100 Hb_002739_100 Hb_002256_030--Hb_002739_100 Hb_000181_070 Hb_000181_070 Hb_000125_170--Hb_000181_070 Hb_000125_170--Hb_031527_040 Hb_000125_170--Hb_000373_150 Hb_000125_170--Hb_007416_180 Hb_003464_050 Hb_003464_050 Hb_000125_170--Hb_003464_050 Hb_001946_040 Hb_001946_040 Hb_003371_150--Hb_001946_040 Hb_000959_270 Hb_000959_270 Hb_003371_150--Hb_000959_270 Hb_000610_010 Hb_000610_010 Hb_003371_150--Hb_000610_010 Hb_004093_090 Hb_004093_090 Hb_003371_150--Hb_004093_090 Hb_003371_150--Hb_036790_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.07754 1.85217 0.91087 1.38387 1.2015 1.53114
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.964112 2.32019 1.55563 0.613778 0.561953

CAGE analysis