Hb_004228_030

Information

Type -
Description -
Location Contig4228: 39278-43079
Sequence    

Annotation

kegg
ID -
description -
nr
ID CDP20116.1
description unnamed protein product [Coffea canephora]
swissprot
ID -
description -
trembl
ID M0WP49
description Uncharacterized protein (Fragment) OS=Hordeum vulgare var. distichum PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004228_030 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_003581_070 0.0882904907 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Malus domestica]
3 Hb_005675_040 0.0904681975 transcription factor TF Family: ERF unnamed protein product [Vitis vinifera]
4 Hb_000373_150 0.1144021383 - - PREDICTED: protein FAM188A [Jatropha curcas]
5 Hb_000125_170 0.1162259141 transcription factor TF Family: mTERF hypothetical protein VITISV_028994 [Vitis vinifera]
6 Hb_000130_240 0.116396602 - - hypothetical protein RCOM_1520720 [Ricinus communis]
7 Hb_005207_050 0.1173373181 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 39 [Jatropha curcas]
8 Hb_003052_140 0.1193955812 - - s-adenosylmethionine decarboxylase, putative [Ricinus communis]
9 Hb_005306_190 0.1198214712 - - Mitochondrial import inner membrane translocase subunit tim23, putative [Ricinus communis]
10 Hb_001437_080 0.1203064908 transcription factor TF Family: TCP hypothetical protein JCGZ_05472 [Jatropha curcas]
11 Hb_004586_140 0.1204392863 - - PREDICTED: uncharacterized protein LOC105630689 [Jatropha curcas]
12 Hb_021576_110 0.1218319743 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 4 [Jatropha curcas]
13 Hb_011512_080 0.1218573867 - - hypothetical protein JCGZ_06424 [Jatropha curcas]
14 Hb_003371_150 0.1227247308 - - PREDICTED: serine/threonine-protein kinase 10 [Jatropha curcas]
15 Hb_000120_330 0.1227631878 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004880_140 0.1232088196 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 1 [Jatropha curcas]
17 Hb_112798_020 0.1236417122 - - dnajc14 protein, putative [Ricinus communis]
18 Hb_011609_100 0.123673336 - - PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Jatropha curcas]
19 Hb_012389_020 0.1237130935 - - hypothetical protein POPTR_0006s05190g [Populus trichocarpa]
20 Hb_003125_200 0.1239740555 - - PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Jatropha curcas]

Gene co-expression network

sample Hb_004228_030 Hb_004228_030 Hb_003581_070 Hb_003581_070 Hb_004228_030--Hb_003581_070 Hb_005675_040 Hb_005675_040 Hb_004228_030--Hb_005675_040 Hb_000373_150 Hb_000373_150 Hb_004228_030--Hb_000373_150 Hb_000125_170 Hb_000125_170 Hb_004228_030--Hb_000125_170 Hb_000130_240 Hb_000130_240 Hb_004228_030--Hb_000130_240 Hb_005207_050 Hb_005207_050 Hb_004228_030--Hb_005207_050 Hb_002813_040 Hb_002813_040 Hb_003581_070--Hb_002813_040 Hb_003052_140 Hb_003052_140 Hb_003581_070--Hb_003052_140 Hb_002256_030 Hb_002256_030 Hb_003581_070--Hb_002256_030 Hb_003581_070--Hb_000125_170 Hb_003371_150 Hb_003371_150 Hb_003581_070--Hb_003371_150 Hb_005675_040--Hb_003052_140 Hb_005675_040--Hb_000125_170 Hb_140506_010 Hb_140506_010 Hb_005675_040--Hb_140506_010 Hb_002411_030 Hb_002411_030 Hb_005675_040--Hb_002411_030 Hb_005541_010 Hb_005541_010 Hb_005675_040--Hb_005541_010 Hb_004767_050 Hb_004767_050 Hb_005675_040--Hb_004767_050 Hb_000373_150--Hb_000125_170 Hb_093084_060 Hb_093084_060 Hb_000373_150--Hb_093084_060 Hb_000521_260 Hb_000521_260 Hb_000373_150--Hb_000521_260 Hb_001780_020 Hb_001780_020 Hb_000373_150--Hb_001780_020 Hb_000373_150--Hb_003052_140 Hb_003464_050 Hb_003464_050 Hb_000373_150--Hb_003464_050 Hb_000181_070 Hb_000181_070 Hb_000125_170--Hb_000181_070 Hb_000125_170--Hb_003052_140 Hb_031527_040 Hb_031527_040 Hb_000125_170--Hb_031527_040 Hb_007416_180 Hb_007416_180 Hb_000125_170--Hb_007416_180 Hb_000125_170--Hb_003464_050 Hb_111198_010 Hb_111198_010 Hb_000130_240--Hb_111198_010 Hb_001247_130 Hb_001247_130 Hb_000130_240--Hb_001247_130 Hb_000307_190 Hb_000307_190 Hb_000130_240--Hb_000307_190 Hb_005137_050 Hb_005137_050 Hb_000130_240--Hb_005137_050 Hb_000130_240--Hb_002411_030 Hb_032208_040 Hb_032208_040 Hb_000130_240--Hb_032208_040 Hb_010381_030 Hb_010381_030 Hb_005207_050--Hb_010381_030 Hb_009627_030 Hb_009627_030 Hb_005207_050--Hb_009627_030 Hb_006922_010 Hb_006922_010 Hb_005207_050--Hb_006922_010 Hb_002900_090 Hb_002900_090 Hb_005207_050--Hb_002900_090 Hb_000484_130 Hb_000484_130 Hb_005207_050--Hb_000484_130 Hb_033772_030 Hb_033772_030 Hb_005207_050--Hb_033772_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.594263 0.68611 0.336643 0.337049 0.384386 0.499099
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.230784 0.846718 0.43341 0.343975 0.12014

CAGE analysis