Hb_009627_030

Information

Type -
Description -
Location Contig9627: 37982-39214
Sequence    

Annotation

kegg
ID pop:POPTR_0012s02160g
description POPTRDRAFT_569545; hypothetical protein
nr
ID XP_012087720.1
description PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]
swissprot
ID Q9SU30
description F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2
trembl
ID A0A067JYS1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26452 PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box kelch-repeat protein at3g23880-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009627_030 0.0 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]
2 Hb_006922_010 0.0774651848 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]
3 Hb_005207_050 0.0819630744 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 39 [Jatropha curcas]
4 Hb_003906_200 0.0828350022 - - PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
5 Hb_007017_040 0.0931432393 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
6 Hb_010381_030 0.093938061 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]
7 Hb_001205_200 0.0942821377 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004143_100 0.095141658 - - conserved hypothetical protein [Ricinus communis]
9 Hb_017387_010 0.0953071986 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
10 Hb_002900_090 0.0968950761 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105646817 [Jatropha curcas]
11 Hb_033772_030 0.0971543105 - - PREDICTED: CST complex subunit CTC1 [Jatropha curcas]
12 Hb_109484_010 0.0972865657 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
13 Hb_000329_230 0.0981760857 - - PREDICTED: uncharacterized protein LOC105643152 [Jatropha curcas]
14 Hb_015807_150 0.1004406854 - - actin binding protein, putative [Ricinus communis]
15 Hb_011360_050 0.1025075838 - - PREDICTED: BAG family molecular chaperone regulator 8, chloroplastic [Jatropha curcas]
16 Hb_007850_090 0.1027312401 - - PREDICTED: probable galacturonosyltransferase 11 isoform X1 [Jatropha curcas]
17 Hb_000089_180 0.1028610734 - - PREDICTED: homoserine kinase-like [Jatropha curcas]
18 Hb_003175_030 0.1039455009 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
19 Hb_000072_120 0.1044833736 - - serine/threonine protein kinase, putative [Ricinus communis]
20 Hb_000649_110 0.1045155947 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_009627_030 Hb_009627_030 Hb_006922_010 Hb_006922_010 Hb_009627_030--Hb_006922_010 Hb_005207_050 Hb_005207_050 Hb_009627_030--Hb_005207_050 Hb_003906_200 Hb_003906_200 Hb_009627_030--Hb_003906_200 Hb_007017_040 Hb_007017_040 Hb_009627_030--Hb_007017_040 Hb_010381_030 Hb_010381_030 Hb_009627_030--Hb_010381_030 Hb_001205_200 Hb_001205_200 Hb_009627_030--Hb_001205_200 Hb_033772_030 Hb_033772_030 Hb_006922_010--Hb_033772_030 Hb_005000_260 Hb_005000_260 Hb_006922_010--Hb_005000_260 Hb_002900_090 Hb_002900_090 Hb_006922_010--Hb_002900_090 Hb_003370_030 Hb_003370_030 Hb_006922_010--Hb_003370_030 Hb_007163_120 Hb_007163_120 Hb_006922_010--Hb_007163_120 Hb_000739_100 Hb_000739_100 Hb_006922_010--Hb_000739_100 Hb_005207_050--Hb_010381_030 Hb_005207_050--Hb_006922_010 Hb_005207_050--Hb_002900_090 Hb_000484_130 Hb_000484_130 Hb_005207_050--Hb_000484_130 Hb_005207_050--Hb_033772_030 Hb_112198_010 Hb_112198_010 Hb_003906_200--Hb_112198_010 Hb_002492_010 Hb_002492_010 Hb_003906_200--Hb_002492_010 Hb_004143_100 Hb_004143_100 Hb_003906_200--Hb_004143_100 Hb_001473_160 Hb_001473_160 Hb_003906_200--Hb_001473_160 Hb_000072_120 Hb_000072_120 Hb_003906_200--Hb_000072_120 Hb_003544_060 Hb_003544_060 Hb_003906_200--Hb_003544_060 Hb_004994_240 Hb_004994_240 Hb_007017_040--Hb_004994_240 Hb_002232_480 Hb_002232_480 Hb_007017_040--Hb_002232_480 Hb_084490_010 Hb_084490_010 Hb_007017_040--Hb_084490_010 Hb_003688_180 Hb_003688_180 Hb_007017_040--Hb_003688_180 Hb_003398_080 Hb_003398_080 Hb_007017_040--Hb_003398_080 Hb_011360_050 Hb_011360_050 Hb_007017_040--Hb_011360_050 Hb_003175_030 Hb_003175_030 Hb_010381_030--Hb_003175_030 Hb_010381_030--Hb_006922_010 Hb_005389_160 Hb_005389_160 Hb_010381_030--Hb_005389_160 Hb_010381_030--Hb_033772_030 Hb_000363_400 Hb_000363_400 Hb_010381_030--Hb_000363_400 Hb_000087_060 Hb_000087_060 Hb_001205_200--Hb_000087_060 Hb_001205_200--Hb_004143_100 Hb_000076_160 Hb_000076_160 Hb_001205_200--Hb_000076_160 Hb_000402_230 Hb_000402_230 Hb_001205_200--Hb_000402_230 Hb_000358_230 Hb_000358_230 Hb_001205_200--Hb_000358_230 Hb_003866_080 Hb_003866_080 Hb_001205_200--Hb_003866_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.5664 18.6075 7.45448 14.2482 5.28691 9.05967
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.63799 11.0921 9.15139 11.4556 5.44331

CAGE analysis