Hb_005389_160

Information

Type -
Description -
Location Contig5389: 161528-167728
Sequence    

Annotation

kegg
ID pop:POPTR_0018s09140g
description POPTRDRAFT_835886; casein kinase family protein
nr
ID XP_012076747.1
description PREDICTED: casein kinase I [Jatropha curcas]
swissprot
ID P42158
description Casein kinase I isoform delta-like OS=Arabidopsis thaliana GN=At4g26100 PE=2 SV=2
trembl
ID A0A067KPL2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07285 PE=3 SV=1
Gene Ontology
ID GO:0004674
description casein kinase i

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47724: 161402-161507 , PASA_asmbl_47725: 161546-168340 , PASA_asmbl_47726: 161549-165751 , PASA_asmbl_47727: 164004-164321
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005389_160 0.0 - - PREDICTED: casein kinase I [Jatropha curcas]
2 Hb_000373_100 0.0420591838 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
3 Hb_010417_070 0.0626765305 - - PREDICTED: uncharacterized protein LOC105645744 isoform X1 [Jatropha curcas]
4 Hb_000347_120 0.0677485342 - - PREDICTED: uncharacterized protein LOC105631363 [Jatropha curcas]
5 Hb_000363_120 0.0704500147 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
6 Hb_001104_170 0.0713206607 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-2c [Jatropha curcas]
7 Hb_003398_080 0.0737958659 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
8 Hb_007054_040 0.0745499844 - - PREDICTED: protein RST1 [Jatropha curcas]
9 Hb_001545_150 0.0751595972 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105635527 [Jatropha curcas]
10 Hb_003866_080 0.0752948634 - - PREDICTED: uncharacterized protein LOC105639150 [Jatropha curcas]
11 Hb_000940_200 0.0763861926 - - PREDICTED: uncharacterized protein LOC105643779 [Jatropha curcas]
12 Hb_000442_010 0.0764445572 - - hypothetical protein POPTR_0010s19060g [Populus trichocarpa]
13 Hb_004410_070 0.0767141535 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
14 Hb_000363_400 0.0788147665 - - PREDICTED: protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5 [Jatropha curcas]
15 Hb_000703_200 0.0795032533 - - PREDICTED: ATP-dependent RNA helicase DHX36-like isoform X1 [Jatropha curcas]
16 Hb_003175_030 0.079684442 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
17 Hb_000402_230 0.0810297434 - - PREDICTED: sorting nexin 2A-like isoform X1 [Jatropha curcas]
18 Hb_010381_030 0.0820923483 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]
19 Hb_004586_290 0.0825943286 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
20 Hb_004899_040 0.0826246444 transcription factor TF Family: ARF Auxin response factor [Medicago truncatula]

Gene co-expression network

sample Hb_005389_160 Hb_005389_160 Hb_000373_100 Hb_000373_100 Hb_005389_160--Hb_000373_100 Hb_010417_070 Hb_010417_070 Hb_005389_160--Hb_010417_070 Hb_000347_120 Hb_000347_120 Hb_005389_160--Hb_000347_120 Hb_000363_120 Hb_000363_120 Hb_005389_160--Hb_000363_120 Hb_001104_170 Hb_001104_170 Hb_005389_160--Hb_001104_170 Hb_003398_080 Hb_003398_080 Hb_005389_160--Hb_003398_080 Hb_000373_100--Hb_000347_120 Hb_007054_040 Hb_007054_040 Hb_000373_100--Hb_007054_040 Hb_000703_200 Hb_000703_200 Hb_000373_100--Hb_000703_200 Hb_000373_100--Hb_010417_070 Hb_001545_150 Hb_001545_150 Hb_000373_100--Hb_001545_150 Hb_060094_020 Hb_060094_020 Hb_010417_070--Hb_060094_020 Hb_003866_080 Hb_003866_080 Hb_010417_070--Hb_003866_080 Hb_001534_210 Hb_001534_210 Hb_010417_070--Hb_001534_210 Hb_004410_070 Hb_004410_070 Hb_010417_070--Hb_004410_070 Hb_002085_030 Hb_002085_030 Hb_010417_070--Hb_002085_030 Hb_000347_120--Hb_010417_070 Hb_004440_040 Hb_004440_040 Hb_000347_120--Hb_004440_040 Hb_000094_320 Hb_000094_320 Hb_000347_120--Hb_000094_320 Hb_000347_120--Hb_004410_070 Hb_000094_090 Hb_000094_090 Hb_000363_120--Hb_000094_090 Hb_000809_160 Hb_000809_160 Hb_000363_120--Hb_000809_160 Hb_031641_010 Hb_031641_010 Hb_000363_120--Hb_031641_010 Hb_000340_030 Hb_000340_030 Hb_000363_120--Hb_000340_030 Hb_004899_040 Hb_004899_040 Hb_000363_120--Hb_004899_040 Hb_000363_120--Hb_001545_150 Hb_000442_010 Hb_000442_010 Hb_001104_170--Hb_000442_010 Hb_001766_020 Hb_001766_020 Hb_001104_170--Hb_001766_020 Hb_000291_010 Hb_000291_010 Hb_001104_170--Hb_000291_010 Hb_000363_400 Hb_000363_400 Hb_001104_170--Hb_000363_400 Hb_001410_020 Hb_001410_020 Hb_001104_170--Hb_001410_020 Hb_001300_010 Hb_001300_010 Hb_003398_080--Hb_001300_010 Hb_000861_080 Hb_000861_080 Hb_003398_080--Hb_000861_080 Hb_000402_230 Hb_000402_230 Hb_003398_080--Hb_000402_230 Hb_004994_240 Hb_004994_240 Hb_003398_080--Hb_004994_240 Hb_003398_080--Hb_001545_150 Hb_000120_910 Hb_000120_910 Hb_003398_080--Hb_000120_910
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.7711 33.5183 14.6856 13.0342 11.8039 11.7272
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.0184 9.45168 12.382 15.4345 9.73714

CAGE analysis