Hb_010381_030

Information

Type -
Description -
Location Contig10381: 11231-15925
Sequence    

Annotation

kegg
ID rcu:RCOM_0312340
description hypothetical protein
nr
ID XP_012068985.1
description PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SN39
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0312340 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01416: 11241-15957 , PASA_asmbl_01417: 14397-14770
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010381_030 0.0 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]
2 Hb_005207_050 0.0705495921 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 39 [Jatropha curcas]
3 Hb_003175_030 0.0729547787 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
4 Hb_006922_010 0.0804401313 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]
5 Hb_005389_160 0.0820923483 - - PREDICTED: casein kinase I [Jatropha curcas]
6 Hb_033772_030 0.0838514701 - - PREDICTED: CST complex subunit CTC1 [Jatropha curcas]
7 Hb_000363_400 0.0853395876 - - PREDICTED: protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5 [Jatropha curcas]
8 Hb_000260_180 0.0863614018 - - PREDICTED: KH domain-containing protein At2g38610 [Jatropha curcas]
9 Hb_003866_080 0.0893246391 - - PREDICTED: uncharacterized protein LOC105639150 [Jatropha curcas]
10 Hb_000940_200 0.0894201146 - - PREDICTED: uncharacterized protein LOC105643779 [Jatropha curcas]
11 Hb_001104_170 0.0899255297 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-2c [Jatropha curcas]
12 Hb_000886_050 0.0904729133 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
13 Hb_002900_090 0.091112237 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105646817 [Jatropha curcas]
14 Hb_000442_010 0.0924992975 - - hypothetical protein POPTR_0010s19060g [Populus trichocarpa]
15 Hb_001005_190 0.0930352347 - - PREDICTED: UPF0496 protein At3g19330-like isoform X1 [Jatropha curcas]
16 Hb_005288_010 0.093242483 - - ubiquitin-protein ligase, putative [Ricinus communis]
17 Hb_001205_200 0.0938299059 - - conserved hypothetical protein [Ricinus communis]
18 Hb_009627_030 0.093938061 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]
19 Hb_001410_020 0.094030609 - - cdk8, putative [Ricinus communis]
20 Hb_002078_220 0.0954715859 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_010381_030 Hb_010381_030 Hb_005207_050 Hb_005207_050 Hb_010381_030--Hb_005207_050 Hb_003175_030 Hb_003175_030 Hb_010381_030--Hb_003175_030 Hb_006922_010 Hb_006922_010 Hb_010381_030--Hb_006922_010 Hb_005389_160 Hb_005389_160 Hb_010381_030--Hb_005389_160 Hb_033772_030 Hb_033772_030 Hb_010381_030--Hb_033772_030 Hb_000363_400 Hb_000363_400 Hb_010381_030--Hb_000363_400 Hb_009627_030 Hb_009627_030 Hb_005207_050--Hb_009627_030 Hb_005207_050--Hb_006922_010 Hb_002900_090 Hb_002900_090 Hb_005207_050--Hb_002900_090 Hb_000484_130 Hb_000484_130 Hb_005207_050--Hb_000484_130 Hb_005207_050--Hb_033772_030 Hb_000886_050 Hb_000886_050 Hb_003175_030--Hb_000886_050 Hb_003175_030--Hb_005389_160 Hb_002078_220 Hb_002078_220 Hb_003175_030--Hb_002078_220 Hb_003752_100 Hb_003752_100 Hb_003175_030--Hb_003752_100 Hb_003398_080 Hb_003398_080 Hb_003175_030--Hb_003398_080 Hb_006922_010--Hb_033772_030 Hb_005000_260 Hb_005000_260 Hb_006922_010--Hb_005000_260 Hb_006922_010--Hb_002900_090 Hb_003370_030 Hb_003370_030 Hb_006922_010--Hb_003370_030 Hb_007163_120 Hb_007163_120 Hb_006922_010--Hb_007163_120 Hb_000739_100 Hb_000739_100 Hb_006922_010--Hb_000739_100 Hb_000373_100 Hb_000373_100 Hb_005389_160--Hb_000373_100 Hb_010417_070 Hb_010417_070 Hb_005389_160--Hb_010417_070 Hb_000347_120 Hb_000347_120 Hb_005389_160--Hb_000347_120 Hb_000363_120 Hb_000363_120 Hb_005389_160--Hb_000363_120 Hb_001104_170 Hb_001104_170 Hb_005389_160--Hb_001104_170 Hb_005389_160--Hb_003398_080 Hb_033772_030--Hb_007163_120 Hb_033772_030--Hb_002900_090 Hb_033772_030--Hb_003370_030 Hb_007765_110 Hb_007765_110 Hb_033772_030--Hb_007765_110 Hb_003464_090 Hb_003464_090 Hb_033772_030--Hb_003464_090 Hb_000352_260 Hb_000352_260 Hb_000363_400--Hb_000352_260 Hb_000922_360 Hb_000922_360 Hb_000363_400--Hb_000922_360 Hb_005288_010 Hb_005288_010 Hb_000363_400--Hb_005288_010 Hb_000363_400--Hb_005389_160 Hb_008160_030 Hb_008160_030 Hb_000363_400--Hb_008160_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.2982 42.5235 17.5894 17.1789 15.3596 15.702
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.7424 24.0645 16.5921 22.1519 11.0454

CAGE analysis