Hb_007017_040

Information

Type -
Description -
Location Contig7017: 27129-31852
Sequence    

Annotation

kegg
ID tcc:TCM_010105
description Phosphatase 2A-2
nr
ID XP_012091995.1
description PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
swissprot
ID Q9ZSE4
description Serine/threonine-protein phosphatase PP2A catalytic subunit OS=Hevea brasiliensis GN=PP2A PE=2 SV=1
trembl
ID A0A067JBS5
description Serine/threonine-protein phosphatase OS=Jatropha curcas GN=JCGZ_21737 PE=3 SV=1
Gene Ontology
ID GO:0004721
description serine threonine-protein phosphatase pp2a catalytic subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54881: 27361-31652 , PASA_asmbl_54882: 29382-29521
cDNA
(Sanger)
(ID:Location)		 026_I14r.ab1: 25915-27176

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007017_040 0.0 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
2 Hb_004994_240 0.0657095583 - - hypothetical protein PRUPE_ppa004633mg [Prunus persica]
3 Hb_002232_480 0.0689717082 - - PREDICTED: telomerase reverse transcriptase [Jatropha curcas]
4 Hb_084490_010 0.0757365393 - - PREDICTED: protein root UVB sensitive 6 isoform X2 [Jatropha curcas]
5 Hb_003688_180 0.076184014 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
6 Hb_003398_080 0.0783325771 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
7 Hb_011360_050 0.0787824829 - - PREDICTED: BAG family molecular chaperone regulator 8, chloroplastic [Jatropha curcas]
8 Hb_001300_010 0.0793607036 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
9 Hb_000802_090 0.0804514032 - - ornithine aminotransferase, putative [Ricinus communis]
10 Hb_004553_030 0.0808783982 - - PREDICTED: uncharacterized protein LOC105629320 [Jatropha curcas]
11 Hb_000029_060 0.0818345475 - - PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
12 Hb_000329_230 0.0839775697 - - PREDICTED: uncharacterized protein LOC105643152 [Jatropha curcas]
13 Hb_000521_330 0.0845075647 - - conserved hypothetical protein [Ricinus communis]
14 Hb_012239_020 0.084558826 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
15 Hb_003906_200 0.0855823176 - - PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
16 Hb_002492_010 0.0863530272 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
17 Hb_000402_230 0.0865848346 - - PREDICTED: sorting nexin 2A-like isoform X1 [Jatropha curcas]
18 Hb_000809_170 0.0869015846 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein 1 homolog isoform X1 [Jatropha curcas]
19 Hb_000363_120 0.0887013091 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
20 Hb_000347_400 0.0888544073 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_007017_040 Hb_007017_040 Hb_004994_240 Hb_004994_240 Hb_007017_040--Hb_004994_240 Hb_002232_480 Hb_002232_480 Hb_007017_040--Hb_002232_480 Hb_084490_010 Hb_084490_010 Hb_007017_040--Hb_084490_010 Hb_003688_180 Hb_003688_180 Hb_007017_040--Hb_003688_180 Hb_003398_080 Hb_003398_080 Hb_007017_040--Hb_003398_080 Hb_011360_050 Hb_011360_050 Hb_007017_040--Hb_011360_050 Hb_001300_010 Hb_001300_010 Hb_004994_240--Hb_001300_010 Hb_004994_240--Hb_002232_480 Hb_002492_010 Hb_002492_010 Hb_004994_240--Hb_002492_010 Hb_012239_020 Hb_012239_020 Hb_004994_240--Hb_012239_020 Hb_004994_240--Hb_003398_080 Hb_000856_040 Hb_000856_040 Hb_004994_240--Hb_000856_040 Hb_002232_480--Hb_011360_050 Hb_000802_090 Hb_000802_090 Hb_002232_480--Hb_000802_090 Hb_002232_480--Hb_001300_010 Hb_001366_090 Hb_001366_090 Hb_002232_480--Hb_001366_090 Hb_000205_240 Hb_000205_240 Hb_084490_010--Hb_000205_240 Hb_084490_010--Hb_012239_020 Hb_003925_040 Hb_003925_040 Hb_084490_010--Hb_003925_040 Hb_084490_010--Hb_003688_180 Hb_000815_240 Hb_000815_240 Hb_084490_010--Hb_000815_240 Hb_003688_180--Hb_011360_050 Hb_020178_040 Hb_020178_040 Hb_003688_180--Hb_020178_040 Hb_017387_010 Hb_017387_010 Hb_003688_180--Hb_017387_010 Hb_000753_230 Hb_000753_230 Hb_003688_180--Hb_000753_230 Hb_002982_020 Hb_002982_020 Hb_003688_180--Hb_002982_020 Hb_003398_080--Hb_001300_010 Hb_000861_080 Hb_000861_080 Hb_003398_080--Hb_000861_080 Hb_000402_230 Hb_000402_230 Hb_003398_080--Hb_000402_230 Hb_001545_150 Hb_001545_150 Hb_003398_080--Hb_001545_150 Hb_000120_910 Hb_000120_910 Hb_003398_080--Hb_000120_910 Hb_011360_050--Hb_000802_090 Hb_007839_020 Hb_007839_020 Hb_011360_050--Hb_007839_020 Hb_011360_050--Hb_002982_020 Hb_001329_200 Hb_001329_200 Hb_011360_050--Hb_001329_200 Hb_000089_180 Hb_000089_180 Hb_011360_050--Hb_000089_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.2274 44.7908 24.9671 36.4367 21.2939 14.7549
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.7488 25.9977 24.2255 22.5645 19.1822

CAGE analysis