Hb_003925_040

Information

Type transcription factor
Description TF Family: C2H2
Location Contig3925: 26096-28298
Sequence    

Annotation

kegg
ID pop:POPTR_0006s05070g
description POPTRDRAFT_819064; hypothetical protein
nr
ID XP_012086146.1
description PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 [Jatropha curcas]
swissprot
ID Q0D5B9
description Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 OS=Oryza sativa subsp. japonica GN=SAP16 PE=2 SV=2
trembl
ID A0A067K2L3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21077 PE=4 SV=1
Gene Ontology
ID GO:0008270
description zinc finger an1 and c2h2 domain-containing stress-associated protein 16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39323: 26143-28293
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003925_040 0.0 transcription factor TF Family: C2H2 PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 [Jatropha curcas]
2 Hb_003147_060 0.0772185661 - - syntaxin, plant, putative [Ricinus communis]
3 Hb_004774_020 0.08650801 - - PREDICTED: PRA1 family protein B4-like [Camelina sativa]
4 Hb_084490_010 0.0970074595 - - PREDICTED: protein root UVB sensitive 6 isoform X2 [Jatropha curcas]
5 Hb_009545_090 0.0991569256 - - hypothetical protein JCGZ_02186 [Jatropha curcas]
6 Hb_004108_240 0.1007609245 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
7 Hb_002042_170 0.1009764636 - - RING/U-box superfamily protein [Theobroma cacao]
8 Hb_000205_240 0.1027234012 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_124677_040 0.1040841344 - - PREDICTED: uncharacterized protein LOC105650471 [Jatropha curcas]
10 Hb_000925_030 0.1043479199 - - ATP-dependent RNA helicase, putative [Ricinus communis]
11 Hb_012239_020 0.1051137016 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
12 Hb_002232_480 0.106206887 - - PREDICTED: telomerase reverse transcriptase [Jatropha curcas]
13 Hb_010287_020 0.1079642943 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
14 Hb_006452_180 0.1090365235 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
15 Hb_013241_010 0.1099072422 - - PREDICTED: small G protein signaling modulator 2 isoform X1 [Jatropha curcas]
16 Hb_001245_050 0.110249202 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
17 Hb_003398_080 0.1109977601 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
18 Hb_000327_140 0.1110418018 - - PREDICTED: probable adenylate kinase 6, chloroplastic [Jatropha curcas]
19 Hb_000699_210 0.1132308659 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
20 Hb_000649_250 0.1133603139 transcription factor TF Family: C2H2 PREDICTED: UBX domain-containing protein 6 [Jatropha curcas]

Gene co-expression network

sample Hb_003925_040 Hb_003925_040 Hb_003147_060 Hb_003147_060 Hb_003925_040--Hb_003147_060 Hb_004774_020 Hb_004774_020 Hb_003925_040--Hb_004774_020 Hb_084490_010 Hb_084490_010 Hb_003925_040--Hb_084490_010 Hb_009545_090 Hb_009545_090 Hb_003925_040--Hb_009545_090 Hb_004108_240 Hb_004108_240 Hb_003925_040--Hb_004108_240 Hb_002042_170 Hb_002042_170 Hb_003925_040--Hb_002042_170 Hb_000925_030 Hb_000925_030 Hb_003147_060--Hb_000925_030 Hb_002869_050 Hb_002869_050 Hb_003147_060--Hb_002869_050 Hb_006452_180 Hb_006452_180 Hb_003147_060--Hb_006452_180 Hb_003147_060--Hb_004108_240 Hb_003147_060--Hb_009545_090 Hb_004774_020--Hb_002042_170 Hb_002900_120 Hb_002900_120 Hb_004774_020--Hb_002900_120 Hb_001439_230 Hb_001439_230 Hb_004774_020--Hb_001439_230 Hb_124677_040 Hb_124677_040 Hb_004774_020--Hb_124677_040 Hb_000699_210 Hb_000699_210 Hb_004774_020--Hb_000699_210 Hb_007017_040 Hb_007017_040 Hb_084490_010--Hb_007017_040 Hb_000205_240 Hb_000205_240 Hb_084490_010--Hb_000205_240 Hb_012239_020 Hb_012239_020 Hb_084490_010--Hb_012239_020 Hb_003688_180 Hb_003688_180 Hb_084490_010--Hb_003688_180 Hb_000815_240 Hb_000815_240 Hb_084490_010--Hb_000815_240 Hb_005015_080 Hb_005015_080 Hb_009545_090--Hb_005015_080 Hb_007943_050 Hb_007943_050 Hb_009545_090--Hb_007943_050 Hb_002232_480 Hb_002232_480 Hb_009545_090--Hb_002232_480 Hb_009545_090--Hb_002869_050 Hb_002553_040 Hb_002553_040 Hb_009545_090--Hb_002553_040 Hb_004108_240--Hb_124677_040 Hb_000045_260 Hb_000045_260 Hb_004108_240--Hb_000045_260 Hb_001376_010 Hb_001376_010 Hb_004108_240--Hb_001376_010 Hb_004108_240--Hb_004774_020 Hb_000156_090 Hb_000156_090 Hb_002042_170--Hb_000156_090 Hb_010872_070 Hb_010872_070 Hb_002042_170--Hb_010872_070 Hb_000656_390 Hb_000656_390 Hb_002042_170--Hb_000656_390 Hb_171900_020 Hb_171900_020 Hb_002042_170--Hb_171900_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.85793 30.644 18.26 16.4315 7.25886 6.12316
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.9932 12.724 9.21983 6.78315 9.25386

CAGE analysis