Hb_002869_050

Information

Type -
Description -
Location Contig2869: 49389-49967
Sequence    

Annotation

kegg
ID rcu:RCOM_0279040
description Transmembrane and coiled-coil domains protein, putative
nr
ID XP_012076053.1
description PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Jatropha curcas]
swissprot
ID Q5I0H4
description Transmembrane and coiled-coil domains protein 1 OS=Rattus norvegicus GN=Tmco1 PE=2 SV=1
trembl
ID A0A067KED3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12765 PE=4 SV=1
Gene Ontology
ID GO:0016020
description transmembrane and coiled-coil domain-containing protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29903: 49402-50182
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002869_050 0.0 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Jatropha curcas]
2 Hb_002232_480 0.090330206 - - PREDICTED: telomerase reverse transcriptase [Jatropha curcas]
3 Hb_000170_240 0.0951641156 - - PREDICTED: auxilin-related protein 1 [Jatropha curcas]
4 Hb_000445_470 0.0953509045 - - PREDICTED: RING finger and transmembrane domain-containing protein 1-like [Jatropha curcas]
5 Hb_003147_060 0.096075521 - - syntaxin, plant, putative [Ricinus communis]
6 Hb_005381_020 0.0975894972 - - PREDICTED: uncharacterized protein LOC105630417 [Jatropha curcas]
7 Hb_009545_090 0.0987405516 - - hypothetical protein JCGZ_02186 [Jatropha curcas]
8 Hb_000671_080 0.0988161535 - - PREDICTED: 5'-adenylylsulfate reductase-like 4 [Jatropha curcas]
9 Hb_000418_010 0.0997681442 - - PREDICTED: repressor of RNA polymerase III transcription MAF1 homolog [Jatropha curcas]
10 Hb_000802_090 0.101320347 - - ornithine aminotransferase, putative [Ricinus communis]
11 Hb_001258_100 0.1014172292 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
12 Hb_004079_130 0.1055022932 - - PREDICTED: uncharacterized protein LOC105637708 [Jatropha curcas]
13 Hb_000395_040 0.1060297802 - - PREDICTED: uncharacterized protein LOC105645576 [Jatropha curcas]
14 Hb_011360_050 0.1101067519 - - PREDICTED: BAG family molecular chaperone regulator 8, chloroplastic [Jatropha curcas]
15 Hb_005015_080 0.1103544329 - - PREDICTED: shikimate kinase 1, chloroplastic [Jatropha curcas]
16 Hb_005288_140 0.1108982764 - - PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta-like [Jatropha curcas]
17 Hb_002311_380 0.1153462625 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
18 Hb_000866_450 0.116191627 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
19 Hb_001366_090 0.1168905853 transcription factor TF Family: NAC hypothetical protein RCOM_1341380 [Ricinus communis]
20 Hb_001408_110 0.1178726522 - - hypothetical protein EUGRSUZ_I02762 [Eucalyptus grandis]

Gene co-expression network

sample Hb_002869_050 Hb_002869_050 Hb_002232_480 Hb_002232_480 Hb_002869_050--Hb_002232_480 Hb_000170_240 Hb_000170_240 Hb_002869_050--Hb_000170_240 Hb_000445_470 Hb_000445_470 Hb_002869_050--Hb_000445_470 Hb_003147_060 Hb_003147_060 Hb_002869_050--Hb_003147_060 Hb_005381_020 Hb_005381_020 Hb_002869_050--Hb_005381_020 Hb_009545_090 Hb_009545_090 Hb_002869_050--Hb_009545_090 Hb_004994_240 Hb_004994_240 Hb_002232_480--Hb_004994_240 Hb_011360_050 Hb_011360_050 Hb_002232_480--Hb_011360_050 Hb_000802_090 Hb_000802_090 Hb_002232_480--Hb_000802_090 Hb_001300_010 Hb_001300_010 Hb_002232_480--Hb_001300_010 Hb_001366_090 Hb_001366_090 Hb_002232_480--Hb_001366_090 Hb_007017_040 Hb_007017_040 Hb_002232_480--Hb_007017_040 Hb_000170_240--Hb_000802_090 Hb_001205_200 Hb_001205_200 Hb_000170_240--Hb_001205_200 Hb_000676_260 Hb_000676_260 Hb_000170_240--Hb_000676_260 Hb_000418_010 Hb_000418_010 Hb_000170_240--Hb_000418_010 Hb_000170_240--Hb_011360_050 Hb_000069_480 Hb_000069_480 Hb_000445_470--Hb_000069_480 Hb_001408_110 Hb_001408_110 Hb_000445_470--Hb_001408_110 Hb_000445_470--Hb_005381_020 Hb_004128_130 Hb_004128_130 Hb_000445_470--Hb_004128_130 Hb_001258_100 Hb_001258_100 Hb_000445_470--Hb_001258_100 Hb_000671_080 Hb_000671_080 Hb_000445_470--Hb_000671_080 Hb_003925_040 Hb_003925_040 Hb_003147_060--Hb_003925_040 Hb_000925_030 Hb_000925_030 Hb_003147_060--Hb_000925_030 Hb_006452_180 Hb_006452_180 Hb_003147_060--Hb_006452_180 Hb_004108_240 Hb_004108_240 Hb_003147_060--Hb_004108_240 Hb_003147_060--Hb_009545_090 Hb_000046_570 Hb_000046_570 Hb_005381_020--Hb_000046_570 Hb_007062_040 Hb_007062_040 Hb_005381_020--Hb_007062_040 Hb_000390_250 Hb_000390_250 Hb_005381_020--Hb_000390_250 Hb_000635_040 Hb_000635_040 Hb_005381_020--Hb_000635_040 Hb_005381_020--Hb_001366_090 Hb_002311_380 Hb_002311_380 Hb_005381_020--Hb_002311_380 Hb_005015_080 Hb_005015_080 Hb_009545_090--Hb_005015_080 Hb_007943_050 Hb_007943_050 Hb_009545_090--Hb_007943_050 Hb_009545_090--Hb_002232_480 Hb_009545_090--Hb_003925_040 Hb_002553_040 Hb_002553_040 Hb_009545_090--Hb_002553_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.5516 43.7507 33.6604 45.1638 15.5454 15.7738
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.1739 20.7602 8.00876 16.549 14.4942

CAGE analysis