Hb_003147_060

Information

Type -
Description -
Location Contig3147: 52671-60954
Sequence    

Annotation

kegg
ID rcu:RCOM_1326810
description syntaxin, plant, putative
nr
ID XP_002520048.1
description syntaxin, plant, putative [Ricinus communis]
swissprot
ID P93654
description Syntaxin-22 OS=Arabidopsis thaliana GN=SYP22 PE=1 SV=1
trembl
ID B9S229
description Syntaxin, plant, putative OS=Ricinus communis GN=RCOM_1326810 PE=3 SV=1
Gene Ontology
ID GO:0005622
description syntaxin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33233: 52662-59546 , PASA_asmbl_33234: 57728-57997
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003147_060 0.0 - - syntaxin, plant, putative [Ricinus communis]
2 Hb_003925_040 0.0772185661 transcription factor TF Family: C2H2 PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 [Jatropha curcas]
3 Hb_000925_030 0.0866491421 - - ATP-dependent RNA helicase, putative [Ricinus communis]
4 Hb_002869_050 0.096075521 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Jatropha curcas]
5 Hb_006452_180 0.1024941647 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
6 Hb_004108_240 0.1029580206 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
7 Hb_009545_090 0.1047400261 - - hypothetical protein JCGZ_02186 [Jatropha curcas]
8 Hb_001376_010 0.1089487831 - - diacylglycerol kinase, alpha, putative [Ricinus communis]
9 Hb_000048_080 0.1092665909 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
10 Hb_004774_020 0.1092975083 - - PREDICTED: PRA1 family protein B4-like [Camelina sativa]
11 Hb_000002_240 0.1097323676 - - PREDICTED: transcription factor bHLH104 [Jatropha curcas]
12 Hb_010287_020 0.1123694006 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
13 Hb_000375_290 0.1124835009 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
14 Hb_000230_460 0.1125662363 - - Speckle-type POZ protein, putative [Ricinus communis]
15 Hb_002110_160 0.1142891587 - - PREDICTED: phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic [Jatropha curcas]
16 Hb_124677_040 0.1145461966 - - PREDICTED: uncharacterized protein LOC105650471 [Jatropha curcas]
17 Hb_000699_210 0.1153626952 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
18 Hb_000638_280 0.115885497 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
19 Hb_002232_480 0.1174154076 - - PREDICTED: telomerase reverse transcriptase [Jatropha curcas]
20 Hb_000256_090 0.1186192298 - - PREDICTED: uncharacterized protein LOC105637579 [Jatropha curcas]

Gene co-expression network

sample Hb_003147_060 Hb_003147_060 Hb_003925_040 Hb_003925_040 Hb_003147_060--Hb_003925_040 Hb_000925_030 Hb_000925_030 Hb_003147_060--Hb_000925_030 Hb_002869_050 Hb_002869_050 Hb_003147_060--Hb_002869_050 Hb_006452_180 Hb_006452_180 Hb_003147_060--Hb_006452_180 Hb_004108_240 Hb_004108_240 Hb_003147_060--Hb_004108_240 Hb_009545_090 Hb_009545_090 Hb_003147_060--Hb_009545_090 Hb_004774_020 Hb_004774_020 Hb_003925_040--Hb_004774_020 Hb_084490_010 Hb_084490_010 Hb_003925_040--Hb_084490_010 Hb_003925_040--Hb_009545_090 Hb_003925_040--Hb_004108_240 Hb_002042_170 Hb_002042_170 Hb_003925_040--Hb_002042_170 Hb_000925_030--Hb_003925_040 Hb_000925_030--Hb_004108_240 Hb_124677_040 Hb_124677_040 Hb_000925_030--Hb_124677_040 Hb_002107_060 Hb_002107_060 Hb_000925_030--Hb_002107_060 Hb_001638_030 Hb_001638_030 Hb_000925_030--Hb_001638_030 Hb_002232_480 Hb_002232_480 Hb_002869_050--Hb_002232_480 Hb_000170_240 Hb_000170_240 Hb_002869_050--Hb_000170_240 Hb_000445_470 Hb_000445_470 Hb_002869_050--Hb_000445_470 Hb_005381_020 Hb_005381_020 Hb_002869_050--Hb_005381_020 Hb_002869_050--Hb_009545_090 Hb_010287_020 Hb_010287_020 Hb_006452_180--Hb_010287_020 Hb_000048_080 Hb_000048_080 Hb_006452_180--Hb_000048_080 Hb_008725_050 Hb_008725_050 Hb_006452_180--Hb_008725_050 Hb_001245_050 Hb_001245_050 Hb_006452_180--Hb_001245_050 Hb_001009_120 Hb_001009_120 Hb_006452_180--Hb_001009_120 Hb_000089_210 Hb_000089_210 Hb_006452_180--Hb_000089_210 Hb_004108_240--Hb_124677_040 Hb_000045_260 Hb_000045_260 Hb_004108_240--Hb_000045_260 Hb_001376_010 Hb_001376_010 Hb_004108_240--Hb_001376_010 Hb_004108_240--Hb_004774_020 Hb_005015_080 Hb_005015_080 Hb_009545_090--Hb_005015_080 Hb_007943_050 Hb_007943_050 Hb_009545_090--Hb_007943_050 Hb_009545_090--Hb_002232_480 Hb_002553_040 Hb_002553_040 Hb_009545_090--Hb_002553_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.5214 67.8932 52.8097 41.018 15.4194 14.6593
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.5982 35.029 11.5776 18.2776 22.2529

CAGE analysis