Hb_001638_030

Information

Type desease resistance
Description Gene Name: RPW8
Location Contig1638: 60008-63247
Sequence    

Annotation

kegg
ID rcu:RCOM_1591970
description leucine-rich repeat-containing protein, putative
nr
ID XP_012071716.1
description PREDICTED: probable disease resistance protein At4g33300 [Jatropha curcas]
swissprot
ID Q9SZA7
description Probable disease resistance protein At4g33300 OS=Arabidopsis thaliana GN=At4g33300 PE=2 SV=3
trembl
ID A0A067KTU9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04328 PE=4 SV=1
Gene Ontology
ID GO:0043531
description probable disease resistance protein at4g33300

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14978: 60081-63286
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001638_030 0.0 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At4g33300 [Jatropha curcas]
2 Hb_001235_170 0.1026710821 - - PREDICTED: putative glucuronosyltransferase PGSIP8 [Jatropha curcas]
3 Hb_000925_030 0.112680263 - - ATP-dependent RNA helicase, putative [Ricinus communis]
4 Hb_002685_200 0.113040291 - - PREDICTED: uncharacterized protein LOC105632583 [Jatropha curcas]
5 Hb_006538_130 0.1137377222 - - Uncharacterized protein TCM_009867 [Theobroma cacao]
6 Hb_001376_010 0.1153983385 - - diacylglycerol kinase, alpha, putative [Ricinus communis]
7 Hb_003147_060 0.1243372752 - - syntaxin, plant, putative [Ricinus communis]
8 Hb_009545_090 0.1288479306 - - hypothetical protein JCGZ_02186 [Jatropha curcas]
9 Hb_003925_040 0.1309528234 transcription factor TF Family: C2H2 PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 [Jatropha curcas]
10 Hb_000084_240 0.1349318585 - - PREDICTED: F-box/kelch-repeat protein At1g57790-like [Jatropha curcas]
11 Hb_000186_200 0.1364514371 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
12 Hb_004635_030 0.1376946363 - - PREDICTED: F-box/kelch-repeat protein At1g57790-like [Jatropha curcas]
13 Hb_003078_030 0.1390714575 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
14 Hb_000011_050 0.1398734789 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
15 Hb_004108_240 0.140128708 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
16 Hb_000375_290 0.140919337 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
17 Hb_000638_280 0.1413503072 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
18 Hb_000019_040 0.1438630632 - - PREDICTED: mitochondrial phosphate carrier protein 3, mitochondrial [Jatropha curcas]
19 Hb_000048_080 0.1439590344 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
20 Hb_030116_010 0.146555148 - - F-box protein, atfbl3, putative [Ricinus communis]

Gene co-expression network

sample Hb_001638_030 Hb_001638_030 Hb_001235_170 Hb_001235_170 Hb_001638_030--Hb_001235_170 Hb_000925_030 Hb_000925_030 Hb_001638_030--Hb_000925_030 Hb_002685_200 Hb_002685_200 Hb_001638_030--Hb_002685_200 Hb_006538_130 Hb_006538_130 Hb_001638_030--Hb_006538_130 Hb_001376_010 Hb_001376_010 Hb_001638_030--Hb_001376_010 Hb_003147_060 Hb_003147_060 Hb_001638_030--Hb_003147_060 Hb_171900_020 Hb_171900_020 Hb_001235_170--Hb_171900_020 Hb_005146_080 Hb_005146_080 Hb_001235_170--Hb_005146_080 Hb_001235_170--Hb_002685_200 Hb_014068_050 Hb_014068_050 Hb_001235_170--Hb_014068_050 Hb_001235_170--Hb_001376_010 Hb_000925_030--Hb_003147_060 Hb_003925_040 Hb_003925_040 Hb_000925_030--Hb_003925_040 Hb_004108_240 Hb_004108_240 Hb_000925_030--Hb_004108_240 Hb_124677_040 Hb_124677_040 Hb_000925_030--Hb_124677_040 Hb_002107_060 Hb_002107_060 Hb_000925_030--Hb_002107_060 Hb_000179_240 Hb_000179_240 Hb_002685_200--Hb_000179_240 Hb_012634_020 Hb_012634_020 Hb_002685_200--Hb_012634_020 Hb_003077_050 Hb_003077_050 Hb_002685_200--Hb_003077_050 Hb_002701_210 Hb_002701_210 Hb_002685_200--Hb_002701_210 Hb_000084_240 Hb_000084_240 Hb_002685_200--Hb_000084_240 Hb_000375_290 Hb_000375_290 Hb_006538_130--Hb_000375_290 Hb_008695_090 Hb_008695_090 Hb_006538_130--Hb_008695_090 Hb_000048_080 Hb_000048_080 Hb_006538_130--Hb_000048_080 Hb_000227_270 Hb_000227_270 Hb_006538_130--Hb_000227_270 Hb_023226_070 Hb_023226_070 Hb_006538_130--Hb_023226_070 Hb_004635_030 Hb_004635_030 Hb_006538_130--Hb_004635_030 Hb_000035_050 Hb_000035_050 Hb_001376_010--Hb_000035_050 Hb_000638_280 Hb_000638_280 Hb_001376_010--Hb_000638_280 Hb_004117_170 Hb_004117_170 Hb_001376_010--Hb_004117_170 Hb_001376_010--Hb_004108_240 Hb_002965_050 Hb_002965_050 Hb_001376_010--Hb_002965_050 Hb_000156_090 Hb_000156_090 Hb_001376_010--Hb_000156_090 Hb_003147_060--Hb_003925_040 Hb_002869_050 Hb_002869_050 Hb_003147_060--Hb_002869_050 Hb_006452_180 Hb_006452_180 Hb_003147_060--Hb_006452_180 Hb_003147_060--Hb_004108_240 Hb_009545_090 Hb_009545_090 Hb_003147_060--Hb_009545_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.10321 30.6823 21.1129 13.643 5.64667 6.21418
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.4984 7.86103 5.66201 5.9203 3.4292

CAGE analysis