Hb_004117_170

Information

Type -
Description -
Location Contig4117: 116820-121044
Sequence    

Annotation

kegg
ID rcu:RCOM_1057500
description protein kinase atsik, putative
nr
ID XP_012091054.1
description PREDICTED: probable receptor-like protein kinase At3g55450 [Jatropha curcas]
swissprot
ID Q9LFP7
description Probable receptor-like protein kinase At5g15080 OS=Arabidopsis thaliana GN=At5g15080 PE=2 SV=1
trembl
ID A0A067JDD8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00658 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable receptor-like protein kinase at3g55450

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40764: 117003-120899 , PASA_asmbl_40765: 119674-120239
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004117_170 0.0 - - PREDICTED: probable receptor-like protein kinase At3g55450 [Jatropha curcas]
2 Hb_000035_050 0.0685645088 - - PREDICTED: probable CCR4-associated factor 1 homolog 7 [Jatropha curcas]
3 Hb_013358_020 0.0858088792 - - ccr4-associated factor, putative [Ricinus communis]
4 Hb_018790_050 0.0882077059 - - hypothetical protein CICLE_v10017858mg [Citrus clementina]
5 Hb_007253_010 0.0933531961 - - syntaxin, putative [Ricinus communis]
6 Hb_000749_070 0.0984009073 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
7 Hb_001376_010 0.1008863509 - - diacylglycerol kinase, alpha, putative [Ricinus communis]
8 Hb_171900_020 0.1090832555 - - PREDICTED: uncharacterized protein LOC105643207 [Jatropha curcas]
9 Hb_003077_050 0.1103761424 - - PREDICTED: probable protein phosphatase 2C 63 [Jatropha curcas]
10 Hb_002900_120 0.115072201 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
11 Hb_056196_060 0.1164945141 - - hexokinase [Manihot esculenta]
12 Hb_005714_100 0.1168753546 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]
13 Hb_003581_280 0.1173870536 - - KINASE 2B family protein [Populus trichocarpa]
14 Hb_000069_330 0.1190370024 - - protein with unknown function [Ricinus communis]
15 Hb_002042_170 0.1212382957 - - RING/U-box superfamily protein [Theobroma cacao]
16 Hb_000156_090 0.1220870115 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3 isoform X1 [Jatropha curcas]
17 Hb_159809_050 0.1250250905 - - AT14A, putative [Ricinus communis]
18 Hb_004108_240 0.1277172487 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
19 Hb_001085_300 0.1295860883 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
20 Hb_000421_230 0.1315440478 - - retinal degeneration B beta, putative [Ricinus communis]

Gene co-expression network

sample Hb_004117_170 Hb_004117_170 Hb_000035_050 Hb_000035_050 Hb_004117_170--Hb_000035_050 Hb_013358_020 Hb_013358_020 Hb_004117_170--Hb_013358_020 Hb_018790_050 Hb_018790_050 Hb_004117_170--Hb_018790_050 Hb_007253_010 Hb_007253_010 Hb_004117_170--Hb_007253_010 Hb_000749_070 Hb_000749_070 Hb_004117_170--Hb_000749_070 Hb_001376_010 Hb_001376_010 Hb_004117_170--Hb_001376_010 Hb_000035_050--Hb_013358_020 Hb_005714_100 Hb_005714_100 Hb_000035_050--Hb_005714_100 Hb_000035_050--Hb_018790_050 Hb_056196_060 Hb_056196_060 Hb_000035_050--Hb_056196_060 Hb_000035_050--Hb_001376_010 Hb_013358_020--Hb_000749_070 Hb_013358_020--Hb_007253_010 Hb_013358_020--Hb_018790_050 Hb_084849_010 Hb_084849_010 Hb_013358_020--Hb_084849_010 Hb_001898_130 Hb_001898_130 Hb_018790_050--Hb_001898_130 Hb_018790_050--Hb_056196_060 Hb_018790_050--Hb_007253_010 Hb_159809_050 Hb_159809_050 Hb_007253_010--Hb_159809_050 Hb_007253_010--Hb_000749_070 Hb_007253_010--Hb_000035_050 Hb_001246_160 Hb_001246_160 Hb_000749_070--Hb_001246_160 Hb_000749_070--Hb_159809_050 Hb_000749_070--Hb_000035_050 Hb_000638_280 Hb_000638_280 Hb_001376_010--Hb_000638_280 Hb_004108_240 Hb_004108_240 Hb_001376_010--Hb_004108_240 Hb_002965_050 Hb_002965_050 Hb_001376_010--Hb_002965_050 Hb_000156_090 Hb_000156_090 Hb_001376_010--Hb_000156_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.84181 26.0613 18.8165 18.0904 2.11752 2.73416
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.27552 6.36258 7.62128 5.58177 4.35518

CAGE analysis