Hb_001898_130

Information

Type -
Description -
Location Contig1898: 134893-135591
Sequence    

Annotation

kegg
ID rcu:RCOM_0758890
description ATP binding protein, putative
nr
ID XP_002526444.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SKC5
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0758890 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18836: 134794-137473
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001898_130 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_018790_050 0.0882422322 - - hypothetical protein CICLE_v10017858mg [Citrus clementina]
3 Hb_000069_330 0.1050702725 - - protein with unknown function [Ricinus communis]
4 Hb_003581_280 0.1110738671 - - KINASE 2B family protein [Populus trichocarpa]
5 Hb_000009_200 0.113242227 - - PREDICTED: UPF0496 protein At2g18630 [Jatropha curcas]
6 Hb_001474_050 0.1140637094 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
7 Hb_048476_040 0.1174989396 - - PREDICTED: uncharacterized protein LOC104611656 [Nelumbo nucifera]
8 Hb_002900_120 0.121423544 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
9 Hb_000272_110 0.125476298 - - PREDICTED: uncharacterized protein LOC105633479 isoform X1 [Jatropha curcas]
10 Hb_007382_100 0.1265177262 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
11 Hb_005332_140 0.1282751084 - - PREDICTED: uncharacterized membrane protein At3g27390 isoform X2 [Jatropha curcas]
12 Hb_001294_050 0.1305562297 desease resistance Gene Name: NB-ARC Disease resistance protein RPP13, putative [Ricinus communis]
13 Hb_005064_070 0.1317939521 - - PREDICTED: uncharacterized protein LOC105648318 [Jatropha curcas]
14 Hb_004117_170 0.1319430812 - - PREDICTED: probable receptor-like protein kinase At3g55450 [Jatropha curcas]
15 Hb_001318_150 0.133913958 - - PREDICTED: shaggy-related protein kinase alpha-like [Jatropha curcas]
16 Hb_056196_060 0.1352606762 - - hexokinase [Manihot esculenta]
17 Hb_161901_020 0.1373152456 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Vitis vinifera]
18 Hb_000035_050 0.1378266005 - - PREDICTED: probable CCR4-associated factor 1 homolog 7 [Jatropha curcas]
19 Hb_132840_020 0.1380555677 - - PREDICTED: protein LHY [Jatropha curcas]
20 Hb_005080_020 0.1406925691 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]

Gene co-expression network

sample Hb_001898_130 Hb_001898_130 Hb_018790_050 Hb_018790_050 Hb_001898_130--Hb_018790_050 Hb_000069_330 Hb_000069_330 Hb_001898_130--Hb_000069_330 Hb_003581_280 Hb_003581_280 Hb_001898_130--Hb_003581_280 Hb_000009_200 Hb_000009_200 Hb_001898_130--Hb_000009_200 Hb_001474_050 Hb_001474_050 Hb_001898_130--Hb_001474_050 Hb_048476_040 Hb_048476_040 Hb_001898_130--Hb_048476_040 Hb_013358_020 Hb_013358_020 Hb_018790_050--Hb_013358_020 Hb_004117_170 Hb_004117_170 Hb_018790_050--Hb_004117_170 Hb_056196_060 Hb_056196_060 Hb_018790_050--Hb_056196_060 Hb_000035_050 Hb_000035_050 Hb_018790_050--Hb_000035_050 Hb_007253_010 Hb_007253_010 Hb_018790_050--Hb_007253_010 Hb_003077_050 Hb_003077_050 Hb_000069_330--Hb_003077_050 Hb_000069_330--Hb_000009_200 Hb_007007_080 Hb_007007_080 Hb_000069_330--Hb_007007_080 Hb_000069_330--Hb_004117_170 Hb_005714_100 Hb_005714_100 Hb_000069_330--Hb_005714_100 Hb_002900_120 Hb_002900_120 Hb_003581_280--Hb_002900_120 Hb_000045_260 Hb_000045_260 Hb_003581_280--Hb_000045_260 Hb_124677_040 Hb_124677_040 Hb_003581_280--Hb_124677_040 Hb_000421_230 Hb_000421_230 Hb_003581_280--Hb_000421_230 Hb_005332_140 Hb_005332_140 Hb_003581_280--Hb_005332_140 Hb_004108_240 Hb_004108_240 Hb_003581_280--Hb_004108_240 Hb_000009_200--Hb_005714_100 Hb_008112_010 Hb_008112_010 Hb_000009_200--Hb_008112_010 Hb_001246_160 Hb_001246_160 Hb_000009_200--Hb_001246_160 Hb_000009_200--Hb_000035_050 Hb_000009_200--Hb_056196_060 Hb_001474_050--Hb_005332_140 Hb_000735_140 Hb_000735_140 Hb_001474_050--Hb_000735_140 Hb_003849_190 Hb_003849_190 Hb_001474_050--Hb_003849_190 Hb_001102_200 Hb_001102_200 Hb_001474_050--Hb_001102_200 Hb_143766_030 Hb_143766_030 Hb_001474_050--Hb_143766_030 Hb_005064_070 Hb_005064_070 Hb_048476_040--Hb_005064_070 Hb_132840_020 Hb_132840_020 Hb_048476_040--Hb_132840_020 Hb_000329_790 Hb_000329_790 Hb_048476_040--Hb_000329_790 Hb_005080_020 Hb_005080_020 Hb_048476_040--Hb_005080_020 Hb_054865_050 Hb_054865_050 Hb_048476_040--Hb_054865_050 Hb_001294_050 Hb_001294_050 Hb_048476_040--Hb_001294_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.34958 23.304 19.0249 13.0179 1.02917 1.09176
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.16889 3.97717 4.81568 4.46444 7.83457

CAGE analysis