Hb_056196_060

Information

Type -
Description -
Location Contig56196: 32061-37938
Sequence    

Annotation

kegg
ID rcu:RCOM_1488780
description hexokinase, putative (EC:2.7.1.1)
nr
ID AHY84734.1
description hexokinase [Manihot esculenta]
swissprot
ID Q9SEK2
description Hexokinase-1 OS=Nicotiana tabacum GN=HXK1 PE=2 SV=1
trembl
ID A0A023ZYN3
description Hexokinase OS=Manihot esculenta GN=HXK5 PE=2 SV=1
Gene Ontology
ID GO:0004396
description hexokinase-1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48847: 25554-31117 , PASA_asmbl_48852: 33396-34814
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_056196_060 0.0 - - hexokinase [Manihot esculenta]
2 Hb_003670_030 0.088659105 - - PREDICTED: probable calcium-binding protein CML35 [Jatropha curcas]
3 Hb_018790_050 0.0917223353 - - hypothetical protein CICLE_v10017858mg [Citrus clementina]
4 Hb_000035_050 0.0956245353 - - PREDICTED: probable CCR4-associated factor 1 homolog 7 [Jatropha curcas]
5 Hb_008112_010 0.1023344635 - - PREDICTED: UDP-glucuronate 4-epimerase 1 [Jatropha curcas]
6 Hb_000009_200 0.1057029575 - - PREDICTED: UPF0496 protein At2g18630 [Jatropha curcas]
7 Hb_005714_100 0.1063390744 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]
8 Hb_001085_300 0.109430052 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
9 Hb_001246_160 0.1121446569 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
10 Hb_004117_170 0.1164945141 - - PREDICTED: probable receptor-like protein kinase At3g55450 [Jatropha curcas]
11 Hb_013358_020 0.1172390563 - - ccr4-associated factor, putative [Ricinus communis]
12 Hb_005064_070 0.1203851667 - - PREDICTED: uncharacterized protein LOC105648318 [Jatropha curcas]
13 Hb_000056_080 0.1241845521 - - PREDICTED: protein kinase 2B, chloroplastic [Jatropha curcas]
14 Hb_002849_070 0.1242244521 - - PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]
15 Hb_001135_030 0.1269680375 - - PREDICTED: interaptin-like [Jatropha curcas]
16 Hb_007253_010 0.1273265176 - - syntaxin, putative [Ricinus communis]
17 Hb_001329_080 0.1276664315 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]
18 Hb_010068_070 0.1285004915 - - calcium-dependent protein kinase, putative [Ricinus communis]
19 Hb_001376_010 0.1310805039 - - diacylglycerol kinase, alpha, putative [Ricinus communis]
20 Hb_000735_140 0.1338112067 - - 3-glucanase family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_056196_060 Hb_056196_060 Hb_003670_030 Hb_003670_030 Hb_056196_060--Hb_003670_030 Hb_018790_050 Hb_018790_050 Hb_056196_060--Hb_018790_050 Hb_000035_050 Hb_000035_050 Hb_056196_060--Hb_000035_050 Hb_008112_010 Hb_008112_010 Hb_056196_060--Hb_008112_010 Hb_000009_200 Hb_000009_200 Hb_056196_060--Hb_000009_200 Hb_005714_100 Hb_005714_100 Hb_056196_060--Hb_005714_100 Hb_005064_070 Hb_005064_070 Hb_003670_030--Hb_005064_070 Hb_000056_080 Hb_000056_080 Hb_003670_030--Hb_000056_080 Hb_002325_060 Hb_002325_060 Hb_003670_030--Hb_002325_060 Hb_000375_060 Hb_000375_060 Hb_003670_030--Hb_000375_060 Hb_000000_480 Hb_000000_480 Hb_003670_030--Hb_000000_480 Hb_013358_020 Hb_013358_020 Hb_018790_050--Hb_013358_020 Hb_004117_170 Hb_004117_170 Hb_018790_050--Hb_004117_170 Hb_001898_130 Hb_001898_130 Hb_018790_050--Hb_001898_130 Hb_018790_050--Hb_000035_050 Hb_007253_010 Hb_007253_010 Hb_018790_050--Hb_007253_010 Hb_000035_050--Hb_004117_170 Hb_000035_050--Hb_013358_020 Hb_000035_050--Hb_005714_100 Hb_001376_010 Hb_001376_010 Hb_000035_050--Hb_001376_010 Hb_008112_010--Hb_000009_200 Hb_008112_010--Hb_005714_100 Hb_008112_010--Hb_000035_050 Hb_001085_300 Hb_001085_300 Hb_008112_010--Hb_001085_300 Hb_000735_140 Hb_000735_140 Hb_008112_010--Hb_000735_140 Hb_000009_200--Hb_005714_100 Hb_001246_160 Hb_001246_160 Hb_000009_200--Hb_001246_160 Hb_000069_330 Hb_000069_330 Hb_000009_200--Hb_000069_330 Hb_000009_200--Hb_000035_050 Hb_002875_070 Hb_002875_070 Hb_005714_100--Hb_002875_070 Hb_005714_100--Hb_001376_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.841391 7.66509 7.09795 6.86229 0.593957 1.04914
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.37237 1.1518 1.26232 2.78555 1.71092

CAGE analysis