Hb_001085_300

Information

Type -
Description -
Location Contig1085: 230191-231580
Sequence    

Annotation

kegg
ID fve:101295992
description cyclin-dependent kinase inhibitor 5-like
nr
ID XP_012071158.1
description PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
swissprot
ID Q8GYJ3
description Cyclin-dependent kinase inhibitor 4 OS=Arabidopsis thaliana GN=KRP4 PE=1 SV=2
trembl
ID A0A067L5J1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01136 PE=4 SV=1
Gene Ontology
ID GO:0005634
description cyclin-dependent kinase inhibitor 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02604: 231396-231513
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001085_300 0.0 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
2 Hb_056196_060 0.109430052 - - hexokinase [Manihot esculenta]
3 Hb_000272_110 0.1102059283 - - PREDICTED: uncharacterized protein LOC105633479 isoform X1 [Jatropha curcas]
4 Hb_008112_010 0.1134164475 - - PREDICTED: UDP-glucuronate 4-epimerase 1 [Jatropha curcas]
5 Hb_001318_150 0.11513315 - - PREDICTED: shaggy-related protein kinase alpha-like [Jatropha curcas]
6 Hb_003018_030 0.1172547729 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
7 Hb_004837_220 0.1180263466 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]
8 Hb_001376_010 0.118607948 - - diacylglycerol kinase, alpha, putative [Ricinus communis]
9 Hb_001195_350 0.1187265825 - - hypothetical protein JCGZ_04423 [Jatropha curcas]
10 Hb_001246_160 0.1191885601 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
11 Hb_000421_110 0.1216449233 - - PREDICTED: V-type proton ATPase subunit a1 isoform X2 [Jatropha curcas]
12 Hb_000418_050 0.1220512547 - - PREDICTED: uncharacterized protein LOC105636892 [Jatropha curcas]
13 Hb_002686_150 0.1252843939 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
14 Hb_000000_340 0.1260532413 transcription factor TF Family: NAC PREDICTED: NAC transcription factor 29-like isoform X1 [Jatropha curcas]
15 Hb_000045_260 0.1265179906 - - protein with unknown function [Ricinus communis]
16 Hb_000156_090 0.1267903173 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3 isoform X1 [Jatropha curcas]
17 Hb_000638_280 0.1269304661 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
18 Hb_156635_020 0.1284728667 - - PREDICTED: L-lactate dehydrogenase B [Jatropha curcas]
19 Hb_004117_170 0.1295860883 - - PREDICTED: probable receptor-like protein kinase At3g55450 [Jatropha curcas]
20 Hb_000035_050 0.1307537028 - - PREDICTED: probable CCR4-associated factor 1 homolog 7 [Jatropha curcas]

Gene co-expression network

sample Hb_001085_300 Hb_001085_300 Hb_056196_060 Hb_056196_060 Hb_001085_300--Hb_056196_060 Hb_000272_110 Hb_000272_110 Hb_001085_300--Hb_000272_110 Hb_008112_010 Hb_008112_010 Hb_001085_300--Hb_008112_010 Hb_001318_150 Hb_001318_150 Hb_001085_300--Hb_001318_150 Hb_003018_030 Hb_003018_030 Hb_001085_300--Hb_003018_030 Hb_004837_220 Hb_004837_220 Hb_001085_300--Hb_004837_220 Hb_003670_030 Hb_003670_030 Hb_056196_060--Hb_003670_030 Hb_018790_050 Hb_018790_050 Hb_056196_060--Hb_018790_050 Hb_000035_050 Hb_000035_050 Hb_056196_060--Hb_000035_050 Hb_056196_060--Hb_008112_010 Hb_000009_200 Hb_000009_200 Hb_056196_060--Hb_000009_200 Hb_005714_100 Hb_005714_100 Hb_056196_060--Hb_005714_100 Hb_007007_080 Hb_007007_080 Hb_000272_110--Hb_007007_080 Hb_000272_110--Hb_001318_150 Hb_001246_160 Hb_001246_160 Hb_000272_110--Hb_001246_160 Hb_001898_130 Hb_001898_130 Hb_000272_110--Hb_001898_130 Hb_002876_070 Hb_002876_070 Hb_000272_110--Hb_002876_070 Hb_008112_010--Hb_000009_200 Hb_008112_010--Hb_005714_100 Hb_008112_010--Hb_000035_050 Hb_000735_140 Hb_000735_140 Hb_008112_010--Hb_000735_140 Hb_002249_170 Hb_002249_170 Hb_001318_150--Hb_002249_170 Hb_086639_050 Hb_086639_050 Hb_001318_150--Hb_086639_050 Hb_048476_040 Hb_048476_040 Hb_001318_150--Hb_048476_040 Hb_000111_390 Hb_000111_390 Hb_001318_150--Hb_000111_390 Hb_000156_090 Hb_000156_090 Hb_003018_030--Hb_000156_090 Hb_002965_050 Hb_002965_050 Hb_003018_030--Hb_002965_050 Hb_000866_140 Hb_000866_140 Hb_003018_030--Hb_000866_140 Hb_004319_050 Hb_004319_050 Hb_003018_030--Hb_004319_050 Hb_000034_110 Hb_000034_110 Hb_003018_030--Hb_000034_110 Hb_003428_090 Hb_003428_090 Hb_003018_030--Hb_003428_090 Hb_163968_010 Hb_163968_010 Hb_004837_220--Hb_163968_010 Hb_005000_140 Hb_005000_140 Hb_004837_220--Hb_005000_140 Hb_010368_080 Hb_010368_080 Hb_004837_220--Hb_010368_080 Hb_004267_060 Hb_004267_060 Hb_004837_220--Hb_004267_060 Hb_000000_340 Hb_000000_340 Hb_004837_220--Hb_000000_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.4903 44.6667 40.9004 25.5222 5.67009 4.28093
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.09371 5.70211 7.4422 16.7627 8.2673

CAGE analysis